Protein Info for mRNA_7703 in Rhodosporidium toruloides IFO0880

Name: 16071
Annotation: KOG2996 Rho guanine nucleotide exchange factor VAV3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1320 PF00621: RhoGEF" amino acids 150 to 337 (188 residues), 89.8 bits, see alignment E=1.3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1320 amino acids)

>mRNA_7703 KOG2996 Rho guanine nucleotide exchange factor VAV3 (Rhodosporidium toruloides IFO0880)
MAAPAVARAPSTGPSQRQRAQTLLSASTSANISPSPSRSYHQPLGTGSLRRTQQQGSHVR
SRSHGDAGAGLSAVAKGKRRAVFCDVVVDDLELDENGHCVYPTGPTSDLLNSLGSPITLP
EPSSSQPQPIRPMTPGKVPKVDFDKVRQSLHELWVTEESYLRKVSSLLKDYAIPLRTFSK
RRDTAVIPQFEATHLFINLEQLVPIAEAFEADLRRLVAQMQKDKSGLPSDFGEVILQHVE
RMEPYKKWLANVSASEAIRRELDKHNSSFREFVERTQVHSRETAQATGGFKEFLAEPFQR
VSRYRLMLDPIIVHLPPNDPNVEPLQIAIGILTDICSMQVDDATKRAATFWSLKETIDGF
PDALVGFDREFIDCIDADEIIEIADSRPTTLRCTIFLFNDKVLIAKRPSGDKTGKVHAGV
DDIDRTVSLYQTSHLSSTQASLLGSPKKLRKGVLGFRGLVDLAEVVAVDLGTTGAAPEFG
LVFDHPPVDQSERWCGRPARKFVVANTYAPDVKRAEKEAWLGRFAEAVMRAKLKDGAKAA
RRGKAMLADGSSGETSEVYWALWDRRSYERLRGTEKGKLALHVVDEGSPSLDYGKDARPV
VLVRATLLPSQRCRFEVKSTDSASNSEDTISIDRIAPAIAELGTSYGLFSFPALRPLPIG
SARSRPRSGLLSVFDVFSSGGGLKRGNSLVSKGSSAATTTLDTPNLSASNSPRASSPVSP
QPNSLSQSYRRPVAAKKSAPDLYSSMSGRGSAARNAEAYDGVAEMDVVPSTSATSLRTNG
RGRPRRSLSLPPPLAQPSFHSPTATQEVSYGAPSPAHTTTPETPDDADATMDASFDTPWS
GMRELEAPTTSPIAYRPPVVGSTRRRMIGPRDMRTPSMLHESVRHSSPSQLPFAREHSPT
PQRRPHTSNSSTATFQSSPSCADFIDRSFDSQTSASGATSKRPRPPVEASPRPTPAKKVA
SFADLGMGSRAPGGEGVRNMSGPRRPSNSTLERRIPSSSSGQIKIRSRRVTSGASTIRAP
ATPPKDVAQPDVFSSPAAIVAEKQRQAVEDVQMEEAHPDPFERLRKHVDDMRLKISRELT
TANKENERIVSPTALTRSPQTRNVFGKTFGSENSFASSQHRLSNSSLTDTRPRHKIDVQI
LSDWTRKLADLVDAAQAQAAAVEAAATKPRTPSPVPGNDAGGSALEMEMLEQERDLIAAE
LAALKEEAKTLVNDAFEKQSALQAAQGENAKLRQAYSDICQEADTLYAEFNAALESVTLA
AQAEPSASGEYVDLMQQLEQSVSARYKAEHDLRVYRREVEAELEEKARWGELLRRHGLLA