Protein Info for mRNA_7718 in Rhodosporidium toruloides IFO0880

Name: 16086
Annotation: K08516 YKT6 synaptobrevin homolog YKT6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13774: Longin" amino acids 51 to 119 (69 residues), 49.4 bits, see alignment E=3.9e-17 PF00957: Synaptobrevin" amino acids 150 to 206 (57 residues), 54.9 bits, see alignment E=6.5e-19

Best Hits

Swiss-Prot: 62% identical to YKT6_YARLI: Synaptobrevin homolog YKT6 (YKT6) from Yarrowia lipolytica (strain CLIB 122 / E 150)

KEGG orthology group: K08516, synaptobrevin homolog YKT6 (inferred from 62% identity to yli:YALI0E21329g)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>mRNA_7718 K08516 YKT6 synaptobrevin homolog YKT6 (Rhodosporidium toruloides IFO0880)
MKILSIQILHVVPGQSSSSPAVAVAAAQDLSSFSFYQRGTVGEFMTFLSRTVAERTPPGQ
RQSVQENNYTAHVYSRSSDQLAGVIVSDQEYPVRVAFSLLNKILDEFTTKVQRSEWEAKA
AQGRQSGKQVLVDYPDLATYLQKYQDPKQADAIMKVQQELDETKIILHKTIESVLERGEK
LDSLVDKSAALSASSKSFYKTAKKQASCDL