Protein Info for mRNA_7721 in Rhodosporidium toruloides IFO0880

Name: 16089
Annotation: K19998 SCFD1, SLY1 sec1 family domain-containing protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF00995: Sec1" amino acids 55 to 708 (654 residues), 417.5 bits, see alignment E=7.8e-129

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (716 amino acids)

>mRNA_7721 K19998 SCFD1, SLY1 sec1 family domain-containing protein 1 (Rhodosporidium toruloides IFO0880)
MATAPSTLRDRQLAALQSLLALNSPTASTSTSHGAQGGQAGTLSLSGQGQLPTWKVLVMD
KVAQDVLATSLRVQDLRAAGVTLHLQLHSDRPALPDVPAIYFVSPTSANIQRIAADLRKG
LYASTYVNFTSALPRPLLEEFAETVAKDGTVEGVEQVYDQHLDYLVLAPSLFSLAPSVST
ASTSAAPSTSSNALQPSATAASDVRTTYERLNEARASEEDIEDITDRVAKGLFSVLVTMG
QLPIIRAPRGNAAEMVARKLDSRLRDHMASSRGVNAFSGGVGGDGSFGRPLLVILDRNVD
LVPMLSHSWTYQALVNDVLGMKLNRVTVEAPDAGKLSKKTYDLDAKDFFWAKNAQNPFPQ
VAEEIDLELNKYKQDANEITRSTGVSDVNDLAQVDLTSNAANLKAAITALPELTARKATL
DTHMNIATALLQGIKERGLDELFQMEEAITKQTKRELLEAVRDPTKYKPEDKLRLMLCYY
FSMLASGSDKGFSRDDLAEYERALKEAGADMGPWEYAKKLRDVMRMSSLGATSAQPAPST
AGGDLMRGFSSLSNRLTDRLRDGGIGGVGLDNLISGVKNFLPARKDFPVTRIVEALMDPA
SASTQALQDTDDYLLFDPRSGGRSARPAAATQGRGRQQYTDAIVFTVGGGSLVEYGNLND
YMMRSVPGGGGSGIAGAAGQAGGQPQGLPTRRITYGSTEILTPSDFVKALGSLART