Protein Info for mRNA_7736 in Rhodosporidium toruloides IFO0880

Name: 16104
Annotation: HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 639 to 657 (19 residues), see Phobius details PF07250: Glyoxal_oxid_N" amino acids 130 to 292 (163 residues), 87.6 bits, see alignment E=8.1e-29 PF09118: DUF1929" amino acids 458 to 565 (108 residues), 92.4 bits, see alignment E=1.8e-30

Best Hits

KEGG orthology group: None (inferred from 59% identity to cne:CNF02420)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>mRNA_7736 HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296 (Rhodosporidium toruloides IFO0880)
MAPRSRTRTIASLAAALAAASTALAAPQDNTIEIVGESGVSAQQIFLAQNNKVYVVDKTE
RNPVNVTGAQGTHPAWATEYDNDSNTYRPMDIVTNSFCAGGNVLGNGTWINVGGNQAIGY
GGLNANPLTGPYQDGDGGKATRRLDCSSGTCEWIDDGANYMTTRRWYPTLETLEDGTIII
VGGCDWGGYVNDAGQNNPTYEYYPSRGGPIGLNLLTTTLPANLFPLIWLLPSGNLFINAN
LGTEIFDYKNNVEYPLADIPHAVRTYPGSAATALMPLTPANNWTATIMFCGGTDLQPDQW
TTNWNIAGYPADSTCVSMTPDVSTDWVDEEPLPEGRVMGNWIFLPDGRLVLINGIGKGTA
GYGNTSWAIGQSFGDDPVHTVRYYDPNQPKGSRFSAAIANSTIDRMYHSSATLLPDGSVW
SSGSNPNADYVPYNASGYKYFTEYRVERFYPDYYTANRPQPQGIPQTLTYGGDYFDIKLL
ASDVGKTDNLANTRVTLVRPGFSTHAMNMGQRFVELNMTYTVNSDGSAVLHTAQVPPNPA
ILPPGPVLIFVVVNGVPSQGQWVTVGNGQLGAQTVSAAAALPASQGGPAGKLPWNAGDLV
LTQTTAAVTAPPTAAASSSSSKISSGKDTSGVAALRSDVAAVVGVVLAAIGTAAAWAL