Protein Info for mRNA_7781 in Rhodosporidium toruloides IFO0880

Name: 16149
Annotation: K18664 SLH1 antiviral helicase SLH1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1812 PF04851: ResIII" amino acids 336 to 523 (188 residues), 41.1 bits, see alignment E=3.9e-14 PF00270: DEAD" amino acids 340 to 526 (187 residues), 81.2 bits, see alignment E=1.6e-26 PF02889: Sec63" amino acids 854 to 1155 (302 residues), 263.8 bits, see alignment E=2.7e-82

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1812 amino acids)

>mRNA_7781 K18664 SLH1 antiviral helicase SLH1 (Rhodosporidium toruloides IFO0880)
MADPPADSPRALVDFLRRATSSPADPLSLNSALALVKGARPPNTPLSIAQAPPAIPDLDV
DPLPSLLDSFAPVASTSTAPAGASSSASTGALAWLKKSLVDDVRVAHAVEVLQSGSSDAE
IQGELLDIWGFEGIEDVGEAVRRRAEIVAEAAAEGGQPRTNGFSHEAHHHTDSHPSHPAS
TLSAHARDYTPGSQLSFASAEEVQAAKLAKKAHKREKGKGRADGDGMDGSPDVQEWLRIR
EEQLARGPGALVSGRRPAIEDAPQYPNVYMASKNAGVSIGGQRLALPVGTTREMKELYEE
ITIPAPKAVPFRFNESLVPIGEMDAWGKRTFHAYKTLNRLQSIVYPVAYKSNENMLVCAP
TGAGKTDVALLTILRCLSNLASTPLTSMSDPPKLPPASAYKIVYVAPLKALAAEVTLKFA
KRLAWAGVKVRELTGDMKLTKKEVDETGVIVTTPEKWDVVTRKGAGSGDGEVADKVKLLI
IDEVHLLHEDRGAVIESIAARTLRQVESSQSLIRIVGLSATLPNYVDVADFLGVNRYTGL
FFFDSSFRPVPLEQHFVGVRGKPGSPQSRTNLDNAAFDKVAELVKGGHQCMVFVHARKET
VKTAQMLREKFLAEGLGDLLDPSAGEDTNGKWQGFKRDLASSRNREMKELAAAGFGIHHA
GMLRSDRNISERMFEANVTKVLCCTATLAWGVNLPAYAVVIKGTQVYDSGKGAFVDLSIL
DVLQIFGRAGRPQYEDQGVGYICTTNDKIDHYVSAITQQHPIESKFITGLADSLNAEISL
GTVTNMDEGVRWLGYSYLFVRMRKNPLVYGMTAAEVEQDPLLGSKRHALINNAAKRLVEC
QMISFDRDLGTFTSTDLGRIAARYYIRDASIEIFNKMFRPRMSEADILALISASVEFEQI
QVRENEVDELKKLIEASCPCQVKGGTESSAGKVNVLLQAYISRAYIEDFALVSDTGYVSQ
NAGRIVRALLEIAMAKRWAPVSLVLLNMSKSIEKRMWPFAHPLAQFDLPADLLYNIERWA
DDVPISEVAAMSVADFGALVHQNERLGGFATRAARQLPALEISSTLQPLAHDLLRVRIDL
RKSFEWSEKHHGSIEAFWVWLEDEENLSILGLARILIRPHTTVLQLQFTIPVTTAPKSLH
VRAISDRWIGAEEELFVDLASLVLPPSPAPHLPLLDLPLLSPHDAFATLPHLRQLYGRDS
PTFDPVQTQAFHTIFHTASNTLVASPSSASRATLLELAMWRTFGINPTSTVLYLTPRRVL
ARQAALRLRATFSATSGINVQLVSRVEDLDSLAASQGGVAVASPAALLRILRKRARPFGS
LDLVVGHELHALDASYELALSRLRWMYPAARLVGSSSALADISSLADWLDVPEHASNSFS
PATRTSSLTTNVQPFSTPHSFALLRQMVKPAYDAMRIASGSTIAFVPSRSQCRATAKDLV
THSASDIESSFVADRALDTVAAYAESLSDDDLGEALTHGIAVFHEGLPAAEQRLALELFG
AGIVKVLIVSREACWTLPVRASLVIVMSSQYVTVRQSQDGHDEREVQDYPVPDLLQMQSL
AVPPSAESSAECLILCQKDQAELYGKFFQHGAPLESSLPLDPALSTIVFEDLANHRLQDR
QGVADFLSWTFASRRLVDNPSYYAAELASGTSAMHDDLLSRLADSVIDTLESRCAVLPTG
RTDILVSQLGGYFAEKAIPLDEVQRLQTISLDELVRSVGGKSVKQNGHGLQKGDAEKDAT
VEPATDPHVQSFFQRLPRTVKNDIGERAGLEAEEWERRILLAAFRAGRVPRGKGGLEEKQ
RELVERVIRIRV