Protein Info for mRNA_7802 in Rhodosporidium toruloides IFO0880

Name: 16170
Annotation: KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1545 PF00621: RhoGEF" amino acids 414 to 550 (137 residues), 58 bits, see alignment E=8.1e-20 amino acids 631 to 687 (57 residues), 27.2 bits, see alignment (E = 2.3e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1545 amino acids)

>mRNA_7802 KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases (Rhodosporidium toruloides IFO0880)
MRAAESSEPMRAPTHGQDSPFKPPDPAQLAVRAADSVAEPRLDGLRSHPGDGDGRSEDMG
GQDGQLGQELTGSPKGKGAAAGDELAPLAREADDDEGEEPLFMAQRRTRSLAGSTTSSPS
RSDANTPTKREAKPRPASSYIPASSWTTSLSRLASSNRGSTASLASSSSPSKRQSKSAAE
AADDRSLRSRSASNDEVDSAASSANVSPSLSRRSSTTSTRRARPSPTPSFRHSLRLPFLL
PSIPASPLPPILSPGLTRSSSSPPVLPAIVSAGPISPSWTIDPPTAELDPDPSKLYPAPK
TTSSALPRLPSHPPPALSSFYSRAATSASAPDLSLYASVPPSDSSTSYFPTSTASSPLAS
TCSPLPLVSAATTTLDEPLSHDPELLVADAEAVRIEEREKVERRQADEKRYHALVELVET
ERGYLEHLRVLVKVYFQTLPFLTILTVQEVHAIIRNAEQLLELHERIGERIERVEEELGW
MAEVEDEGERAKRARKAAGRVASIFNEEMPNFALYNDFCARHAEALDITRSIASRQEWEA
FERQCAARASVEAVRRKGDRTPLAATSRQNSMSSLFGAAHLPPVSAPPSSNSPLPFSSTP
LSTPSHSSGTVPTQASLAASSVPSSAAASANGTRSKLRFVDYAISPVQRVTRYPLVFGQL
AKYFADTPEGEAVRQAWEGFKGIAKGVDAAKRAREGEMRTRIVARRMEFSTPLVGGTFCD
VLGPTLLVGAMHVVHSGPASTMGSQAGSAGGAGGPGAGAGQAAEGVRVKYLGCFLYRSHL
VMAKIKKRATYEPREWLPLRVFTIQNMEDGQGPLNHSIRLTFRDHHFDLGALCAGEKAVW
LSHLFAAQEETRRLWDTQELDEHGQPTLFDDSVVSSVPISATAVVEASKRKAHSRSASTI
SVASVFASAASSSASTPAVVHEPLPALPTEFAAIAAATSAAVNASTPPALSTSAPLIPAS
PPTAALALMTTPQFYSPSRFSSTASSLLLGRTPSSQRAAVDLRLADVFSEELLSARAQAA
RDAELESSAAALTGKRLRTISGPKRSMTALTPVLSQSPPMPSTSALPKMLSATGGRDARR
RMSAFELSPSASERAEFRGAIGFDAAQAALYQQDSPGGALGLANVSAAPAVLHEKERGRW
ANAMRKAHRSGGGGSRSRPPLPSIDTALAEATSRKRDSNAGPLSAGGSWTRRSGPGKNRE
RDAGGLGGQLRRVASQPSIEASSSKVPLGSVPTMLVQPDTPLLPETPTPAIASTAPQRTA
SPAADVERNNSVSSNASSSGTGTQSSSSHTHSSHLIETPPSSIPPSPDFANIELLDPLAA
AALVGKHAAFPSPARHAHGFPFPSSPRWANVSDGVSNVFRLRRRKSTLGLVPPAVPSPST
SDESLTARSPTLAPTVIQTPSSAVKLQRRASTTLSGLFSAKKRAQSSPTLAGPNGYFNSP
NNSSPTLPLSGTSSENSSPANSAASTPDQVPTTPEAVAALELASEPPQRGTASSSTSSVS
STSGSKTKEKAGSSGKEKKAKSGSSLFRNRSRFLFATQHGMTPLS