Protein Info for mRNA_7803 in Rhodosporidium toruloides IFO0880

Name: 16171
Annotation: K11855 USP36_42 ubiquitin carboxyl-terminal hydrolase 36/42

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 PF13423: UCH_1" amino acids 133 to 415 (283 residues), 75 bits, see alignment E=8.6e-25 PF00443: UCH" amino acids 134 to 436 (303 residues), 169.5 bits, see alignment E=1.1e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>mRNA_7803 K11855 USP36_42 ubiquitin carboxyl-terminal hydrolase 36/42 (Rhodosporidium toruloides IFO0880)
MDEDDFSARILGATAGAAKPLSLKSLLEQPVKFAPAQGKQQDDEIPYEPINVKPAAGSSS
LPAAGSSSLPNGAPASTSGSPVASTSKQPYTNGLPTPPPSVTAPAASTFGRGSSLFPPID
TNTSWPKPFPVGAGLNNLGNTCFLNSALQVLLHTPPLLRYLESSQHPSENNCKCKQQKDF
CMICTMRACARVSFTGRQRSYSPNPVVRNLKKIAKHMRLGRQEDSHEFLRFSIDAMQAAA
LYGKSPKLEQKIKETTFVHQIFGGRLRSRVHCLACGHNSDTFDSILDLSLDLGNRANTLK
DALDNFVRIDKLSGQNKYKCEKCKKLVNAEKYFAIEDAPLVLTVHLKRFSPTGRKITGQL
RYPETLHLGPYMSNPKVDPSYRLYGIILHSGGGPHSGHYTSYVRSSSGKWHDMNDDYVSS
LSHPPLSDRDAYVLFYVREKGESLKEAIYGGLKSPPNDKVGMALVNGNGKRPRESVGAPV
ARDSPSAPKRPRPSTDSAGAVNGNGKRPRESVGAPVARDSPSAPKRPRPSTDSAGAASSS
PAVPVKVPFMPGAVPASSAYSSSPPQNHSYAGPRPPPVLIAPRPAPTSPTKPSPFPAQTH
SPTKTFQSRTSLPGQGGGQGGGKVRIPLAGNLQPRHQKKKKHGHPAGKYLPKTIHG