Protein Info for mRNA_7817 in Rhodosporidium toruloides IFO0880

Name: 16185
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 transmembrane" amino acids 127 to 146 (20 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 273 to 295 (23 residues), see Phobius details amino acids 307 to 328 (22 residues), see Phobius details amino acids 399 to 417 (19 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 461 to 482 (22 residues), see Phobius details amino acids 488 to 507 (20 residues), see Phobius details amino acids 527 to 547 (21 residues), see Phobius details amino acids 559 to 578 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 129 to 588 (460 residues), 308.6 bits, see alignment E=3.6e-96 PF00083: Sugar_tr" amino acids 134 to 593 (460 residues), 311.2 bits, see alignment E=1.3e-96 PF07690: MFS_1" amino acids 139 to 505 (367 residues), 53.4 bits, see alignment E=2.1e-18

Best Hits

KEGG orthology group: None (inferred from 59% identity to yli:YALI0D00132g)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (638 amino acids)

>mRNA_7817 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSHETEKPATPTFARLQEQVAAEKALSGKADEKRELHGDGEYVEPGATNTVSKAQALDNP
LSGISLDRLEEMGRAFAREKGLGEYEVEFARGAQAAQDPLAFESLPLLSDEDKEVLRRET
THRWSHPAALYFLVICCSMAAATQGMDESVINGANLFLGPQLGLDTSSSNPDAGRNQWLL
GLVNGSPYLCCAVLGCWLTAPVNKVLGRKGAMFLGAFISFAGCIWSACTNSWGHLLGARF
FLGIGIGINSATVPVFAAETAPPLIRGALVMQWQVWTAFGIMLGTVSSLAFYHVADPASA
HITGLNWRLMLGSALLPALFVMLQVPFIPESPRWLIGRGRYVDAFQSLCRIRYTKLQAAR
DLFFINALLEEEASVSTGKSAIVELFTVARNRRAVQASSIVMFMQQFCGINVIAYYSSTI
FRQAGFSEISALGASLGFGTLNWVFAAPAVWTIDTFGRRTLLLTTFPLMALFLLMTGLAF
YIPESSKAHIGVIALGIYLHCMAYSPGEGPVPFTYSAEAFPFYVRDVGMSYATALTWTFN
FIVALTFPRLLDAFTPTGAFLWYAGWNAIGFLLVLLFVPETKGLSLEELDQVFSVPTFKH
SAYQLGALGHGFRKYILRQRVAPYPALYAWEDGTVAKA