Protein Info for mRNA_7818 in Rhodosporidium toruloides IFO0880

Name: 16186
Annotation: K10865 MRE11 double-strand break repair protein MRE11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 743 TIGR00583: DNA repair protein (mre11)" amino acids 26 to 446 (421 residues), 472.2 bits, see alignment E=7e-146 PF00149: Metallophos" amino acids 28 to 278 (251 residues), 47.7 bits, see alignment E=2.9e-16 PF04152: Mre11_DNA_bind" amino acids 326 to 514 (189 residues), 169.9 bits, see alignment E=6.6e-54

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (743 amino acids)

>mRNA_7818 K10865 MRE11 double-strand break repair protein MRE11 (Rhodosporidium toruloides IFO0880)
MSQTPPPGGGFAGPEPRLTQAVEPDNCIKILLATDNHIGYAEKDPIRGRDSINAFKEILD
LAVANDVDMLLLAGDLFHENRPSRTSLYQTISALRERCLSDRPISLELVSDAGLGIMRDA
NWPGINYEDENLNIGLPVFSIHGNHDDPQGVGAQGALCALDVLSASGLINYFGRMELPGQ
ATDDGEALEDGLKVKPILLQKGDTKLALYGMGNIHDDRFVFELTNRRINLYRPSENPEDW
FNIILVHQNRVAHGPNNSVPDEAFGEEAHLVVWGHEHDCISQARPVPVTGRPYYISQPGS
SIATSLAKGEAIPKHVGLIKIQGKEFEFEPIRLRSVRPFVFEEISLLDYHEKQTDDRKKL
MSKVAVTKYLKTKVNELIQRANQEWDELHPDDDDSERLLPLIRLRVDYSGGPDGNSQFEV
GNPQRFGQDFVDKVANPRDIVQFHRKSTTRKAKVTINQPNLSALEAAMAENEETGRISSQ
MEKVTVSSLVHDYLEAQNLNVLSESLIQNAVDEFVGKGDKDAVGNWVRKLLKETRQEILR
KGYEPSKEGPEHDDLGEEMHAAKAAAEAKYGAKGKGKGKEKARAQDSDEDEEDEDEDDES
SRRKAKGKGKAKAREERDSMDDDSDVSMASSSAPRGKKTAAAKGKGKAAPKKVVSKGKGK
ADLFNPDESEDDDEEEASPPPKKKTAPKKTVAKKPAATSTTTRKTPARGASKKAQETLTL
STDSDDSSDEAPTRRTTTRRRER