Protein Info for mRNA_7832 in Rhodosporidium toruloides IFO0880

Name: 16200
Annotation: K14843 PES1, NOP7 pescadillo

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 transmembrane" amino acids 146 to 168 (23 residues), see Phobius details amino acids 195 to 212 (18 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details PF06732: Pescadillo_N" amino acids 14 to 276 (263 residues), 409 bits, see alignment E=1.1e-126 PF16589: BRCT_2" amino acids 370 to 463 (94 residues), 35.8 bits, see alignment E=8.6e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (639 amino acids)

>mRNA_7832 K14843 PES1, NOP7 pescadillo (Rhodosporidium toruloides IFO0880)
MGRTAPRGHNGMKKKGEAGASKNYITRNQAIKKLQCTLGDFRRLCILKGIYPREPKNRKK
ANKGSSAPASFYYAKDIQYLLHEPVLHKLREHKAFAKKLSKAVGRGEWGLAKNLEEQKPT
YRLDHIIKERYPTFVDAVRDLDDALSLIVLFAALPATTTVPASIISNCARLAAEWQLYVM
RTRSLRKVFLSIKGIYFQAEIQGQTVTWLVPYMFTQHIPSDLDYRIMLTFLELYQTLLGF
VFYRLYTEQNLVYPPKLDEVLDENGAGLGALLLEEAGAKGLVVERMPDAEAEQTEKKRVY
AKDVRKQIQEIEKAGVADEGAADEQTADATVAGGSNDAALELDVFPAPANVDESDPTTSV
IQPSSLTASTDLFAPYFFFLSREVTRPTLEFVIRSFGGRVGWDPVLGAGSPYKEDDPRIT
HHVLDRPVLPSSAAALPGKRAFVQPQWVVDCINKKTLLPTDEYKPGAVLPPHLSPFVDED
EVRQRGGYVPEEAGGEGVQLGEEDESEDEEVDEDEAMDEDESAAPALLAAAADPTNEELR
HAAELEAEARGVAPAQFEAELAAETKKAKKAAASGKGDNLQVKKTLTEQQQVAASMMTNS
QRRLLKKLTYSQDRRNEETAKLQQRKKDIEKRKKKASKQ