Protein Info for mRNA_7876 in Rhodosporidium toruloides IFO0880

Name: 16244
Annotation: HMMPfam-Protein of unknown function (DUF4246)-PF14033

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 PF14033: DUF4246" amino acids 51 to 488 (438 residues), 378.7 bits, see alignment E=2.6e-117

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>mRNA_7876 HMMPfam-Protein of unknown function (DUF4246)-PF14033 (Rhodosporidium toruloides IFO0880)
MPRKIRYHWQKPAEEAPPGQRPFPTPFDQIADEDGAWGNDETIESIDGPYTLQEIAMLAL
SYEIRNKPDWERKYLDPTIRAKWKEEALAWAAPKKKYDMPALTENMIDYVLDELALHDKV
AQQAPHGIRLACFTGIYESDTLVPADLRDALLAGAQSSKRTRPTANQTGIPSLVYDVDAS
GTISSRLVKAPAARAADHSCSDEFQWLPADFEVNHNGKVKILSYINNLHPEQHESLYPVL
AGIFERFVPAFERVLSDLQLPPTHRISFDFESVWKWHDEAEKSMPDFGDEWWDKQERWEA
QRPVHLPEPEPFSMPATVQFEPVFPLKGRKLQVIVKLANIHLTPEKPDYPGGVWHVEGMQ
NEEIVTSGIYYFDQDNIGESTLAFRGTFDQGRLLYAQNDHRGVQQMYGVDSEGPLIQNHN
SVRTSKDRAIVFPNVYQHRVSPFSLVDRSKPGYRKILCFFLVDPLKTDAGLIISTSRVPP
QQFSWLEDAVWDLPPQVLDKLPHEIWEILRQAAPHYMSFKKAKRVREDLMEERKYLHDEN
KRIVFERPFSLCEH