Protein Info for mRNA_7880 in Rhodosporidium toruloides IFO0880

Name: 16248
Annotation: K02940 RP-L9e, RPL9 large subunit ribosomal protein L9e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF00347: Ribosomal_L6" amino acids 12 to 93 (82 residues), 40.8 bits, see alignment E=1.5e-14 amino acids 105 to 184 (80 residues), 36.4 bits, see alignment E=3.5e-13

Best Hits

KEGG orthology group: K02940, large subunit ribosomal protein L9e (inferred from 67% identity to scm:SCHCODRAFT_63119)

Predicted SEED Role

"LSU ribosomal protein L9e (L6p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>mRNA_7880 K02940 RP-L9e, RPL9 large subunit ribosomal protein L9e (Rhodosporidium toruloides IFO0880)
MKQVYKEEELEVPEGVTVAVKSRVITVTGPRGTLQKNAQHVDMSIRVLAPSEKALKPVHR
VKLVVWHGGRKHVACLRTIRSQIENMIQGVRYGFAYKMRLVYAHFPINVIIAGDKQAVEI
RNFLGEKRVRHVKMLEGVTISESKAQKDEIILEGNDVDAVSQSAASIHGQTLVRNKDIRK
FLDGIYVSEK