Protein Info for mRNA_7884 in Rhodosporidium toruloides IFO0880

Name: 16252
Annotation: KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF00385: Chromo" amino acids 15 to 63 (49 residues), 45.3 bits, see alignment 6.5e-16 PF01393: Chromo_shadow" amino acids 182 to 224 (43 residues), 35.9 bits, see alignment 6.5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (243 amino acids)

>mRNA_7884 KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins (Rhodosporidium toruloides IFO0880)
MARSKSKKVEEEEEYEVNEILDHKRKGKTMTYYVSWVGYNEEDNTWEPAANFHAPDKIEA
YWDSLPESKQGDRPKGLGSGGGKRKRTEEEEEEAEEDDEEAAVKKVKKEKKSKKSVNGGA
KKKVKKAKEEQPAEEEEEGEDEPVGFGEVDPDRELVDYDSVGVFTKESWEKEDVTIETVE
RDEDGSVRWNVVWEDGTASWIPGEILRYKCPQKVITFYEEHLKFRPKEKEEEAQAGGEEE
AEE