Protein Info for mRNA_7890 in Rhodosporidium toruloides IFO0880

Name: 16258
Annotation: K19564 CTR, HNM1 choline transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 transmembrane" amino acids 69 to 94 (26 residues), see Phobius details amino acids 101 to 127 (27 residues), see Phobius details amino acids 151 to 180 (30 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 302 to 325 (24 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 403 to 424 (22 residues), see Phobius details amino acids 430 to 453 (24 residues), see Phobius details amino acids 474 to 496 (23 residues), see Phobius details amino acids 508 to 527 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 67 to 517 (451 residues), 196.4 bits, see alignment E=8.2e-62 PF00324: AA_permease" amino acids 78 to 526 (449 residues), 87.6 bits, see alignment E=7.6e-29

Best Hits

KEGG orthology group: None (inferred from 60% identity to cnb:CNBE0980)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (580 amino acids)

>mRNA_7890 K19564 CTR, HNM1 choline transport protein (Rhodosporidium toruloides IFO0880)
MATPTTAPAPQRHLASTPTSVHSASSIQASTPMKGGSTTTDGEKHYTHETINQVTKHEQN
HGQLKNFSMLSLIGLAYCVLNSWTAMASSLSIVLPSGGPVAMLWGLCVSFVGNLATAASL
AEIVHVFPTSGGPYHMSHILAPLSWAPQISWVTGWLACAGWVTLTATTGSLAAALLLGMY
GLSHDEFESQPYQTFVIYTGFIVIATFINIYGSRLLPLINSAAIIWSLAGATVILIVCLA
TSAPNYQSASYVFGTLINETGFPNGIAFILGLLQSSFGLIGIDALSHMVEEIPEPHKNVP
RAMIAAVCIGAGSSWVLLLALLFVMRDPATAITSTAGSLLATIYQATGNVAGSICLQVFP
LVSMEFAAQGILCAASRQVFAFARDEGLPFSGFFGKADPKTGVPVRAVLFVAVWVEIFAL
IYFGSSAAFNAILSVSVVLLNISYIIPIILLLARGRHLLRPESFPSPTWTLGPILGPVAN
VVAVSFTAMTTVFFLFPPSAKPTGSSMNYAVAVMGIVFILSVITWLFQGRKTFTGPRDLG
GLLELARAEVNDERVLSRQGTRRRESRSRERAHGEEKTVA