Protein Info for mRNA_7893 in Rhodosporidium toruloides IFO0880

Name: 16261
Annotation: KOG0928 Pattern-formation protein/guanine nucleotide exchange factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1353 PF01369: Sec7" amino acids 785 to 975 (191 residues), 115.5 bits, see alignment E=1.2e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1353 amino acids)

>mRNA_7893 KOG0928 Pattern-formation protein/guanine nucleotide exchange factor (Rhodosporidium toruloides IFO0880)
MAKLTGTAPPPLPPKDLFPSFEALAAPGQGGGAGVMPTLEELQQRARAKLLAAQQAGAGL
VRNNTVTSSSAPLASAEDGLALKRNNTVTGIGGGGEGLLDAPIDRDKIRVNLMRKLSARR
LEGPSRARAADGLDVVGRIGRTRPRSGSWSAGGSNGGLGGVDVALQHEEGATGGLAPPLA
FGGPFLGAVARDERHRLDPLNTQEVVRDSQLTPLDRPPRLDTSNGQTPERTPQASYLNSW
QSQPPNDETDLATPSAQHSSTLQPASYPIYRSTPSSSTDSTTSASSTDSTALRAARAATS
RPAFLPSFGIAAVEGRGMDTEEDDETVAAAAARKRGSSASSSVAAQGGWGRWRGSDATTA
LPSLAAADPSRRPSVLATGIGLGVGGLSSPTSPGSSTAALRKGSTASSNRMRMTSSTGSD
DSRGQATRTRPPSSGSATSSRPERVEEEDRAESEMEEEKARGFPPPVLGYQFPSPVASPR
DSQVAAGEQVSTEAKGPAESPQQLFRHLASTSKAPSAATPTISVPSPSLSARKGNGLQFS
LANYQPFSPNNHLTASPLLPDPVSPTSVIPDPMAALTFPSSSPPKPGQTKSPHVNGTATS
PRTRLDPPPTSQGMSKSPSTDSNMSFHSAGASSYHSPVMMRRDLSNSSLAHDPFPTQPRV
PRLPADQLPSNRILAKLGSILGDEALASTDPSPLDSPPRKLLLQASVLQVVNANTVKDRH
LFLFNDMLVIAKPLIQHDADTGDPVLPSLDSHFLTKSVVECKRLKIAAAEEPVDEGSSSS
SKKRHPLLLAFVDRFANDPARAIASLVQKGGLANDGPTIANLLFRNTDLNRNQLGVYLAN
PNHRSVLRAYTERFRFAGVRIDDAIRLFLMSVRLPYDVKAAKYVLGVVASIWAEANPASG
FDPAVTLSLVMALLRLSDALHGTDGPDGRFFNAPKPQVPPNVDQFIEAFREADPRSVVSE
DLLSRVYTSVRRERIEHASDNSIFSMTPDIEATIEPAKLPTQLIYRVPSETFTITIPEPD
PRFTIKLHGNDLQFDPPVLSFARSNKQSFRVTGTALGVRVMVLIKRGANAPRYQGLPLNK
AFSIERAFMQHTFQLSFTNHLDVKRKYMFSCTSNEERAQWIRVLRDRIAATAGAPSPPHD
TAATAAQTVAVQVLRDSLLPPDEPLPLPPAAPSPRPNLATPRLGPPGTPGTSRGRVGTPT
RPGSQLARSNSVSKLYAVQYRQENDSSPASSLPGYGGGSFSGSVGERQRVGSLTPAAAAA
AAAAKMQAAAQLKDEVAEAKAQHGSFVKTGHELVTTTEQNSLLPVVLAFLNAGLEAAPHP
LSLQGSAFQLPLLPSSSSSSDYPPHPFPSLFAP