Protein Info for mRNA_7902 in Rhodosporidium toruloides IFO0880

Name: 16270
Annotation: K13348 MPV17 protein Mpv17

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 16 to 40 (25 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 211 to 229 (19 residues), see Phobius details PF04117: Mpv17_PMP22" amino acids 167 to 228 (62 residues), 79.9 bits, see alignment E=6.8e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>mRNA_7902 K13348 MPV17 protein Mpv17 (Rhodosporidium toruloides IFO0880)
MSSLLRTYTRSFERRPYITLCVANGILMSVGDISAQMLGLGQGLQPMYDLTRTLRFAVFG
ASMGPLGGAWNKFLEVNFPLRPLPSASPMQKVKVDSPIPGLEKHFPKGSKLERGSGLGEK
VPVPTGTAPSMSEKEPPVSVVQLAKRVAADQLGMAPISLFIFLFSMSLLEGLDSEETKEK
IKQNYLPILLVNWQIWPIAVAINFRYVPLRYRVPFGSILGILWTCFLSFRTQTEK