Protein Info for mRNA_7903 in Rhodosporidium toruloides IFO0880

Name: 16271
Annotation: K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 674 PF00270: DEAD" amino acids 35 to 232 (198 residues), 116.3 bits, see alignment E=2e-37 PF04851: ResIII" amino acids 47 to 189 (143 residues), 26.9 bits, see alignment E=7e-10 PF00271: Helicase_C" amino acids 266 to 452 (187 residues), 98.4 bits, see alignment E=4.9e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (674 amino acids)

>mRNA_7903 K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9 (Rhodosporidium toruloides IFO0880)
MAPRSSKVAAFADLEPTLHPLLLRSLAALGFAVPTPIQHTLIPLALESNRDILARARTGS
GKTLAYAVPLVQGILSRRDRGELEGTRALVLVPTRELAEQVRGQIARLVEGLGIGEKEGD
GIRVVNVVGEAGGRNKKRKTAHAGGERVERMALADRPEIVVATPSRALAHLRSETLHLSH
LDYLVIDEADLILSYGHSSEDIRSILSGPWGLPKVYQSFLMSATLTGEVEELKGVVLRNP
VVLKLEEDEDELANLSQYCVRCTEEDKFLLLYVILKLRLIKGKCLIFVNDTDRGYRVKLF
LEKFGIKSGVLNAELPFNSRYHAVQEFNRGVFDYLIATDESGLEGHDRDTNDDEEGEASA
GSKEEYATVIATQPAAENEGNAEASTSTAAASEPPSKKRKRKDASASSKASTTEYGVSRG
IDFVDVACVINFDLPFSARSYTHRVGRTARAGRTGTSLSFIVPRDVWGKQKKNDVSLETA
RFDERVWARIERAQKAKGQDVKEYKFDLKQVEGFRYRMEDGLRSVTKAAVREARVKEIKN
EVLNSEKLKAHFEDNPRDLAFLRHDKPLHPSRVQPHLKHVPGYLMPRIAAVGANDSRAAS
AAAAASAGTNGGDEQKPEVSFHKPGRGGRGGARGGRGGARGGRGGARGAKAGAGGKRQDP
LKGGAFKFGAGAKK