Protein Info for mRNA_7910 in Rhodosporidium toruloides IFO0880

Name: 16278
Annotation: KOG3767 Sideroflexin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 107 to 125 (19 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 264 to 281 (18 residues), see Phobius details amino acids 298 to 320 (23 residues), see Phobius details TIGR00798: tricarboxylate carrier" amino acids 18 to 348 (331 residues), 334.4 bits, see alignment E=2.7e-104 PF03820: Mtc" amino acids 27 to 348 (322 residues), 400 bits, see alignment E=3.4e-124

Best Hits

KEGG orthology group: None (inferred from 61% identity to cnb:CNBJ0520)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>mRNA_7910 KOG3767 Sideroflexin (Rhodosporidium toruloides IFO0880)
MATSLATPKLAQGEPDAPPFDITQPRYDTKTYFGRVRHFASITSPLTLLASPTDLKNAQR
LLKEYQEGTGEGRKAWGHEDQYGVWKAKQLVDSSIHPDTGEPVPLPFRLSAFVPTNLVIV
AGMLAPNPSLKSVIFWQWANQSLNVCVNYSNANKSIKMSTSEIASAYAAATVASCSIAVG
LSQLVPRLRVSPSARALLSKLVPFAAVASAGCVNIGLMRWKEMRDGISVFKPSDPKTGRP
SSEELGKSSIAGAYAVGQTAASRVLTNIPTLILPPLIMTLLEKRGVFNRPNGRRVNTVTH
IGLIGLSLLVFLPPAIAAFPSRASISPKKLEERFHGVPFEEVEFNKGL