Protein Info for mRNA_7920 in Rhodosporidium toruloides IFO0880

Name: 16288
Annotation: K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 90 PF01111: CKS" amino acids 18 to 84 (67 residues), 110.5 bits, see alignment E=1.9e-36

Best Hits

Swiss-Prot: 60% identical to CKS1_MOUSE: Cyclin-dependent kinases regulatory subunit 1 (Cks1b) from Mus musculus

KEGG orthology group: K02219, cyclin-dependent kinase regulatory subunit CKS1 (inferred from 56% identity to tca:664555)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (90 amino acids)

>mRNA_7920 K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1 (Rhodosporidium toruloides IFO0880)
MPAAEDRRRAVEKYQQDIWYSARYSDDEFEYRHVILPKALVKYLPKDRLAEEDEWRSLGV
QQSPGWWHYERHAPEPHIMLFKRAKDKNGN