Protein Info for mRNA_7942 in Rhodosporidium toruloides IFO0880

Name: 16310
Annotation: K12824 TCERG1, CA150 transcription elongation regulator 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 789 PF01846: FF" amino acids 321 to 369 (49 residues), 41.1 bits, see alignment 1.7e-14 amino acids 396 to 442 (47 residues), 21.1 bits, see alignment 2.9e-08 amino acids 456 to 506 (51 residues), 44.1 bits, see alignment 1.9e-15 amino acids 571 to 621 (51 residues), 26.2 bits, see alignment 7.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (789 amino acids)

>mRNA_7942 K12824 TCERG1, CA150 transcription elongation regulator 1 (Rhodosporidium toruloides IFO0880)
MSGAPPPPPPPGFPQAFLPPVPPPWTEHRAPNGTPYWFNPLTNVSTYTRPVPAPPPGFPV
AGASIPPPPPGFPVAVPPASAPPAQFAPPIHFSAAADGATGKKKEKKEKPKEKKPIEGTP
WIRVTTNKGNVFYNNKETKESLWTVPEEIKEQVEALEKEEREAKEREEREEREKEEAEAK
AKSASPASGKKRKAANEDEAAEDGAEEQEGSPVEEEKGDLDIEIEGAAEGSGLPSKPEEA
TLPAPTADAQPPKKKKAKTKVVTSLEELDDEDWQRQMAAEMAKEAEDQEKQEQEAAVAAE
AEKQKVEEQRAPKLEVDQVEAAALYKVLLSEKDINPMAPFETELPKFVNDPRYHAVKSQR
DRRDLFDEFCKEKIREQRAAKKRAAESGQKVDPLTAYRQLLATVVTSTRTHFSDFKRSHQ
KDQRYRDFGKTEGDREKEFKRYLRELGERKREAAEKAEREFREMLSEDREIRPGDKWADV
KKRHANDSRYTAVNSSSLREQLFNKHVSALASGSSSAPSASTSSGKPALSKEDKAARAAA
SLREREERVRQEKMRAERNTNLARGNLGKEEAEREFGQLLVDAVRDHKTRFDDLASSLSL
DPRFDAPALTPLDKRRLFDAHQAKLYRSRVADVESLFAAHSPKLTTPFHDVLPSISSDPH
VTRLVGDDFDQLEKLYDSWVATRTQRAREDFTQMLKENSILEHWGRLKKMEKREDVKMIG
EEGVREDSEDEEPDVKAMAEQVDLRAIHAVLKNDKRYLEFNHVPEERARWVEEYVENLAA
PKTTVHQRD