Protein Info for mRNA_7950 in Rhodosporidium toruloides IFO0880

Name: 16318
Annotation: K04802 PCNA proliferating cell nuclear antigen

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 TIGR00590: proliferating cell nuclear antigen (pcna)" amino acids 1 to 188 (188 residues), 280 bits, see alignment E=9.5e-88 PF00705: PCNA_N" amino acids 1 to 124 (124 residues), 177.8 bits, see alignment E=7.4e-57 PF02747: PCNA_C" amino acids 127 to 188 (62 residues), 74.1 bits, see alignment E=1.2e-24 amino acids 323 to 386 (64 residues), 67.5 bits, see alignment E=1.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>mRNA_7950 K04802 PCNA proliferating cell nuclear antigen (Rhodosporidium toruloides IFO0880)
MLEAKLEQAELLKKILDAVKELVTDANFDCSDEGIKLQAMDNSHVALVSLNLAKTGFSEY
RCDRDMSLGVSLASLQKIVKCAGNNDILTLRADESVDVLALLFEAKHADRVGEYEMKLMD
IDQEHLGIPDTVYDAEIDLPATEFARIIRDLKELGESVKIEVSKEGVRFSADGDIGTASV
TLKPTDKRGRKADSDGEDSDEEEEQDEEDEDEEAEEPEPKEEEDEDGDVKPKISASDDED
DDAPAKSKAGKKRKAVADSEEEDGADENGDEAPSPKKVKKESGKAKPAKKEKKKAAPKKG
RASSSSSKAKSSKGKKAKGGDEEKSMDVRINLQQAVALTFSIKYLSNFAKSTPLAERVHL
HMSNEVPLLVEYAFEQGHIRYYLAPKLTDE