Protein Info for mRNA_7973 in Rhodosporidium toruloides IFO0880

Name: 16341
Annotation: KOG3511 Sortilin and related receptors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1506 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 1403 to 1424 (22 residues), see Phobius details amino acids 1445 to 1465 (21 residues), see Phobius details PF15902: Sortilin-Vps10" amino acids 70 to 563 (494 residues), 472.1 bits, see alignment E=1.9e-145 amino acids 776 to 1226 (451 residues), 514 bits, see alignment E=3.6e-158 PF15901: Sortilin_C" amino acids 568 to 735 (168 residues), 159.8 bits, see alignment E=8.5e-51 amino acids 1228 to 1388 (161 residues), 149.9 bits, see alignment E=9.6e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1506 amino acids)

>mRNA_7973 KOG3511 Sortilin and related receptors (Rhodosporidium toruloides IFO0880)
MPSQHRRWRPPALLLPLVALVVLVLTSLVAASPEGPKPQLSHSLFDNLPSKITYFEDSPV
VLYHDQIARDVYRSPNEGKEWHLVEGVPRGDAYMLIEHPYDKSIAFILSSSTTHYRTMNR
GETWQSFVTALAPSLSSNTLSFHARKWDWILFAGQKCEDVGGWQGRVCHDETFYTKDAFA
SSPKPLLPYTTRCIFAHDKEEMAAYVPDELVYCAAYEPPSASQSSTSSTGSTLKDAISSL
IGGAPRSLRESRLWSSTDWFEKERTYVDLGIGREAKGVVGIGGVQKYLVTALKPSLGGSS
DDKGGAGEGSGEMVLYVTEDGSTWSRAQFPHGHGLRENAYTIVESTPHSILVDVNSSPSA
TAGTLFTSNSNGTYFVRSLENTNRNKNGIVDFERIVGIEGVAIVNTVRNVAEVEAGHEKD
LKTMITFDDGGHWSLIKAPPVDHKGRKVKCDTDDVDSCSLHLHSVTQPHNYGRVFSSTAP
GLVMGVGSIGSRLLPYDDCDAFVSTDAGLTWRMVDDGAKKYEFGDQGAVLVMVEDEEPTD
ELKYSFDYGKTWYEFDLGVKLRARLLTTVPDSTSLKFILLGTLTRNSKHKGSQGERHVIV
YMDFESLGKRKCEDRDMEKWYARTIGGQPDCLMGHKQWFTRRKQDADCVVAEKWKDPVGR
EEDCPCDDEDYECDYNFAPDGMGGCTLVGPEPTPPGQCLRDGDKFMGSSGFRLIPGNTCD
VKGGIKKDAKVEKPCHAGQETPGLVTHQSFTFPGYVIDHAYFGDSHTILAFTNKNRVWQS
MNQGFSWHEAVSEANVLAMTMHGYARDRAYLITDSRTVHYTTDKGNSWNKFTAPADPNGL
GIPLLDFHPLKADWLIWTGQINCGDNDSTTCRAVAYMTKDNGRNWSKLEEYVRVCSWGRD
KKFRIDEKTVFCEAYRDKKGSQRAVYQNNNPLQLISGEFFYSHKTTLFDSIVGFATFENY
MVVAETYENSRAIGLKVSMDGKTFALARFPPNMHLENQAYTVLESTTDSVFLHVTTHADV
GSEWGTLFKSNSNGTYYGPSLEYVNRNGRGFVDFEKSIGLDGIAVVNIVSNPDEAALSSN
KKLQTRITHNDGGRWKPLNPPAKDALGQAYECRGTNCALHIHGYTERDDPRATYSSPSAT
GVMLAVGNVGEHLISYTDSDTFLTRDGGFTWEEVHKDAHMWEFGDQGTILILANDEQPTD
HVTYTLNQGLSWQDYSFGETIRVKSIVTVPMDTSRKFILFGTKPDRPEQTVAIHLDFSSI
TNIKCKLDLAHPSNDDFELWSPSENRDEPCLFGMQALYHRRIRDRNCFVGERLPQPHKIE
KYCACTEQDFECEFNYKRNARGECVLVEGAQPLESDQTCAWDQPFWYERTSMRKVPHSKC
VGGLQLDKGPAHVCPGHSRRGGFFWATIAVLPFGLAALAAFWWNRRRSGKGRIRLPEPGE
PGRSGVVEFLVSVPWFLIGIVGVAIEKLRNIELPFVGRRNRRGGYRSLRLDMDAELLADY
DDDEEL