Protein Info for mRNA_8000 in Rhodosporidium toruloides IFO0880

Name: 16368
Annotation: K08991 MUS81 crossover junction endonuclease MUS81

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 PF02732: ERCC4" amino acids 762 to 906 (145 residues), 64.3 bits, see alignment E=8e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1073 amino acids)

>mRNA_8000 K08991 MUS81 crossover junction endonuclease MUS81 (Rhodosporidium toruloides IFO0880)
MPKVCGNPEWAEWVQELADRAEERGEKSSQTYKRAANALRSCPIPFTHPDDALQLVGVGP
KIVQYLVGKVKAKCEKEGLPMPDRITSPTRPRVQKAPKKKRPSAPSSDGEVDPREARRQR
LTKGNPALPPPGAIAFQAHPDGHEWNKPLPGQKTGKAPRAAAAGSDLENDEEEAGEGKGK
GKGKGKAREYIPRQNSGAYAILLSLYKNASYDERQFWTTKSKIIEDGQDYSNTPFETGTA
VRGGQVQGGQSFTYSAWSGMKTLTGKDLVVSDNKRPAKFALTPAGYALAEKLAPSAGIAV
HARHPTSSAGHPSSSGPNPPSSSGPAPGASRPGLLPGLGRSRGSSSTGATTSGPSVGRSS
FHASAPRQRQRTPPLFLEDSPPRANGAADEDEDPEFQAQMRAALELSRRESTAALSSERD
DLFEGGARNGYISTSGKGLDGRKAASGIYAATAKHTVAAPVVKNVDTAFGYFYLTEDDAR
TLRRDEAETSQTDDGADLLFRIEYRADLLFRIEYRAAQDLHPMVRGLKKVAHLTRSEPLP
GGMTKSGYIRERVSNSIAPGFPQKNRAAAAAVNGAKKEKAVEADAMSSLLGGYKAPEKRS
KEAMYAAPPQVRHLGGSGAESGAKRGAASVADVLARFNSAAAGIADDPPVPPAASSSRPP
TIRPAPASAAVGSSPKRPRLSASSILADAPRATSSTSTQKPLFASFDAPAASFAASASNG
EPIINRHPLDPVRDHVASSSYTLTPFSPIVWPAGSFKVYLVVDSREGTREHGKRVELCEK
IEREGVRVDGKMMPLGDMIWVAKKVDPATGRPAGGDDVVLDAIVERKRLDDLCTSIIDGR
YVGQKFRLKDSGISHRIYLIEKYDVAAQYEKFGKQIWTCKSQLQVNDGFLVHESANMADT
INWLKKRTQVMSEMYESQDLHIIPDSHIDRTSYLSLQHHLRQRSPATVHHTTYSSFCALN
RPDAALTLRTQWASMIQRVSGVSAEKAVQFLGRWETPRQFWEEACGHELEVERENETLEA
AAVGAKGKRQPKKRKAEDFVFEELDDGGTRGIKGKLGAKIWELFMAEGERYAS