Protein Info for mRNA_8004 in Rhodosporidium toruloides IFO0880

Name: 16372
Annotation: K06648 SWI6 regulatory protein SWI6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 778 transmembrane" amino acids 748 to 773 (26 residues), see Phobius details PF04383: KilA-N" amino acids 8 to 70 (63 residues), 22.5 bits, see alignment 2.2e-08 PF13637: Ank_4" amino acids 291 to 331 (41 residues), 24.2 bits, see alignment 1e-08 PF13606: Ank_3" amino acids 409 to 435 (27 residues), 19 bits, see alignment (E = 3.7e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (778 amino acids)

>mRNA_8004 K06648 SWI6 regulatory protein SWI6 (Rhodosporidium toruloides IFO0880)
MMVRGIGVMRRRADSWLNATQILKVAGVDKAKRTKILEKDIAQGVHEKVQGGYGRYQGTW
IPFERSVELANAFGVSHLLAPLFDYTAPPPPVALGGAAPPPPIVNPYGVSGPPQLPPPPP
PQQHVQQPHPQDASAILNQARQQGLLPNPMAGPSSLHEQQQMPPPQSTMGHKRGGDSLDQ
EDVKRVRMELTNGFNGVANGYPPPAPASFPPSVVPVSNFRTTLKSSTKTAFDPAAVDPVQ
LDRQRTALKSIFAMEAEQPLGGGPTLVPDLSSIFPPDVHVEPDTPIDENLHTALHWASAL
ARISLVHALVKYGADIHRGNNVGETPLIRAVLVTNNADQDSFLRLLEVLGPSLRTVDDVG
RSVLHHTALVAGVKGRASSATYYLETILEYIATADGGRFKDLVDAVDMYGDTALNIAARI
GNRTLVRMLLEVGADKLKPNKLGLRPTDYGLEDPELTVNAAEETLHALQNQDGASSAPVQ
ASQDVLRSLSDTLSSLSSSFQAELGSKTAELDAKKAQLQSLVRELANKRAALTRARAEAN
HVEEQAQRVKNLSHAIDNEDSFDWTGRTDADGSPASALAGPGFTYRGPGSTLSNLPSTMS
IEFDADPPFPDTDAGVTGESLVHLLRLQAWHERVENLMNQRLEKLRGGNADMEAKLKKIV
AGCCGVDEDKVDGMLEGLVTALERCVAASIYRLECCADRTPSLSQRPLRDRSLPRRQLPQ
PRQGRRHALSFALLRRHRPARFTACSSVPAVTFVLAVLSGSLPSFTLVYQLVVLSPSS