Protein Info for mRNA_8012 in Rhodosporidium toruloides IFO0880

Name: 16380
Annotation: HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 637 PF00076: RRM_1" amino acids 292 to 361 (70 residues), 63.8 bits, see alignment E=5.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (637 amino acids)

>mRNA_8012 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 (Rhodosporidium toruloides IFO0880)
MATASSPAPPPPHSVLSFPILYLSGLPSSVADEEIVEALKDCLRLRLFLQRDEGDPSAPL
SGKIEFETLDKAERAYATCNNQRLSSGHTLLLSLSPPSSSSDPEPQATPRIIKHLPSPFS
ASHLFTLCRPFGPLYSATLLLAPFSGGAPRFKGQALVTFYDEHDAEEMQRALHFTEVGGQ
SVAVQVWDAKRAAGGRGRASLGATPSPGLSPNEKVSRWAATQSQQETPSKFSRYAGLAST
PSTPSAPMRRDVSGASASSTASRWSSEAGEVGQGGQGATAGPGPTGSDPRNLFIKNLDPS
LPASSLHALFSPFGVLTSTSLALDPLTNRSKGFGFVAFERAEDAERALREVDGRVVEGRR
VVVSVLERREVRRERLGREFAAREGKKEEKGVEEVRKGMEDLSTGPTTPSSSPPRTFKPV
SPFFPSDAPSTPPQPQPQPQAESHEESEHDRLVRAVGEVLPDVAQKKREEVVRLIEGLPK
KDRKMCLFNSEVLRVKVADAMGILEDEGEEAPTPTNDSPATAPATLPALALLPCSQILPL
LPALSLYPSPSDLSQTHAFMDSLAGKPVSEVKQRLGEKVFRVVKELARERGVKGAPRITI
TLLDSEPDLRALAVVALHYREVLAEKVVGVAQKLAGE