Protein Info for mRNA_8025 in Rhodosporidium toruloides IFO0880

Name: 16393
Annotation: KOG0118 FOG RRM domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 transmembrane" amino acids 191 to 212 (22 residues), see Phobius details PF00076: RRM_1" amino acids 62 to 131 (70 residues), 58.9 bits, see alignment 1.8e-20 amino acids 426 to 495 (70 residues), 63.5 bits, see alignment 6.6e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1050 amino acids)

>mRNA_8025 KOG0118 FOG RRM domain (Rhodosporidium toruloides IFO0880)
MNGGPPHPPGEHPYPPPPPPPSLNRPPLPQSYTTSATLDTHRRIHPAQHQQPQQQQDTRT
QLFVSNLPFRVRWQDLKDLMRKCGTVLRADVALNPTDGRSRGFGVVLFAKAEDAAKAIAT
YHGYTWQTRVLDVRIDAQDPTGALALAEANRQQAAQKAQQQQGQRGSPVLPPPPPPPPPP
GMMGMPGMAPMGMVPMGMAGMGMVAAPFGPMLVQVPSPLGQTFLAPAQQKQQPPPAQQQQ
RSSSPYLSPEAARSSPTQLQPDQGSPNVQSRNSSASPSPSPAHSPAADSTSPTNERKSPL
LAPPSRDPSSSSPVPPPPPPPGSSSNPDIPPQFQHLMAMQHAPPPPPPPSSIPPHLQQHQ
HPHQPHPQQAMVVPMMSIHPMGYAVPAAGLLGYYPSPSSSNGIGRPGSAPPGAGPHGSGQ
YTNRHLFVGNLPFNCQWQELKDLMRGAGNVLRADIAQGPDGRSRGFGSVLFASQGDAERA
VGMFNGYEFNGRALKVHFDKFAGAAVNPNQQNGPNSSNGPSHHYPPPPPPHHAYPPPPPP
QHPYPYANGQQHQQQQQFVMPVPTRAAGAGEGYIGAPSPLAQLAFGGGREKEGSPTDSRP
GTAVKRQEQVEPREGGAGEGGENERDGEEERTKDAREATASAHHLVHPHPHPASSFSRGH
HNPAAPSRIAMPPPLPFASLAGYAGATSASVATPSGPFSPLGHTTSNRLAGLGPMTPSMP
AFTFGGAGPFAAQPTPPLMPGGMFSPGDFNVGPFSPGVPFFGGHQQPNGAQGVGAWGNVA
PGQQTPEFNPMFPAYPYSAAHGANGEYAQQHQEQHGEEQQQPSGEAEEETQQQEAADEPS
YFPPVSAPSPATTIMRSPLPHSASAPPLSPRVSPSQARPSLDDARTGANGPGHSVSETLA
LSNAFEGLAVGGRGASRSLQNSPRPQAQLDVGGGGAFGSSLQPGWAEGLSPPASVEATGE
TSRRRSLVPSAGSAAGLGGGEGAAGAAQRGVSVGPTAKGASAGLVVPDVGVAGGPRRASM
DSSSPALAAGAGGAPPSRGGRAAFGTSIWG