Protein Info for mRNA_8026 in Rhodosporidium toruloides IFO0880

Name: 16394
Annotation: K03515 REV1 DNA repair protein REV1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1216 PF16589: BRCT_2" amino acids 102 to 188 (87 residues), 28.9 bits, see alignment 2.5e-10 PF00817: IMS" amino acids 438 to 593 (156 residues), 127 bits, see alignment E=1.3e-40 PF11799: IMS_C" amino acids 680 to 805 (126 residues), 53.9 bits, see alignment E=5.7e-18 PF16727: REV1_C" amino acids 1116 to 1212 (97 residues), 55.7 bits, see alignment E=1.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1216 amino acids)

>mRNA_8026 K03515 REV1 DNA repair protein REV1 (Rhodosporidium toruloides IFO0880)
MTSSSSTVASEGSDDSALDLALADFDPDTTLSSSSLNPPRTADATRRPPQGMKRAAADVE
VDYRDQHFYEPVKFGEFGKYMRNKRKKLQVQNKAMLEDGEEKPQIFRGLRVYINGFTDGV
THPELVELLVQHGAEYVPYLDKKSLVTHIVAANLTPSKRKEFASYKVVKHVWLVESVKAR
KLLDWREFSLLAPPKSAPAPVTTSSTVVPGAGSLAAETAARLGTQTGQMSLFSMGVGKGA
DAVTPSGRGHDVGPTAGSQQRTETIETLSERGARLAKEALKAQSSAAANPFFRPRSTSNI
NDGARSPSRPMTPKKPRKLVSGEAPDIFPPPERIAANLPATTDSPGKPNAITHSWLPQTE
RSERTNALLQDADWLSKHTASSADFLEGYFAQSRLHWISTFKEELKVIMAAKQQSVVRPA
RKKKLTGRASDGRTIFHVDFDCFFVSAGLTTRPELRGKPVAVCHAKGDADAASSTSEIAS
CSYEARSRGVKNGMSLGRARELCPDIQTMPFEFDLYRSITLTFYDILLAHASYLQVVSMD
ECLMEVDVPPTVFRDQDPAMDLARKLRADILDATGCQASIGISHNILLARLAMRKAKPAS
AFHLFPEDVDEFLLPLDVDSLPGIGWSLRDKLKKELDVETVGDLRRVPPYKLARTIGPEN
GKKFAAFAQGVDDRELEVGKPRQSVSTEVNYGIRFPPGRNDLVEQFMRNLGAETAKRLRA
QGLQARQLTLKVMTRHPDAPIDTPKFLGHGYCNTENKVSTITGRSGGATDDSDVVGETVW
KLMRSMQAPAHELRGIGIQLSKLEKDGVPVDVVREKGQSTLSFQPATKKPSVPAVLLPTS
PRQPAVSEAIPAQPAAVTISSSPQETVMPASEPRPCEKSPAAPALRKEPSTIILDSDSDS
EEIAPRVPPLPPARLSTGPLRQRTRRTRTPDPYIPSMFRPTKKAVAPPPPTASQVTDAEL
SYYGIDPETYRTLDRDLRVEVLRDARRSKPPPTKDKLEGFARKETTPPMGDKGPPVGDLP
APKAPPAVIVLPPSPSELTDTQIAAMQYDPSMFRALGKSTQLEQIEVHKARQKRLVVGDR
PKGESTDASGPRLRAPVKDVTIRVPPRFQGKVELSDVLDRVENWVQLAKSDGPDNDDLDA
LGRYVEKCASRDKGHDLKKATDVLRWWGCVLEQEFGQRGAADAGTTASLWWEGLAQVQER
LEWLVLKESGSRLRCF