Protein Info for mRNA_8028 in Rhodosporidium toruloides IFO0880

Name: 16396
Annotation: K06100 SYMPK symplekin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 PF11935: DUF3453" amino acids 64 to 274 (211 residues), 151.4 bits, see alignment E=3.2e-48 PF12295: Symplekin_C" amino acids 799 to 990 (192 residues), 195.4 bits, see alignment E=1e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1040 amino acids)

>mRNA_8028 K06100 SYMPK symplekin (Rhodosporidium toruloides IFO0880)
MSYYSSSAPPAHQAASPAPSVSADLALVSSLSEPSTQPALKANAAVQAVEPLARLLLNPP
DLAALKIALAGFASAYPFLFRYACQSGDQNQWNRVISLKMAVLQLWRNGSIGGKVGAVKA
IQRIVQTQSTAQTADPRLARNPEPNLSLCRPNHPFLKIAALEDESNKLLEECVTTLFTSN
SADLVSAIVSSLATLLKNRPQYAKLVITSLTNWSPAALAGQSVRQIKSVEKVVRLTLMHL
MRSTHGSAYRSQITDSLNQQATRMAQAAAEAQRRKDEEASKKRQLLASQIDEQQVKRRRL
NPSMDAVRLFSAANPAFERPPPSIADLPLETVVTSLAVRRQLPASEALTPREGTPKPEAP
AVDPLKLDLGADELDLKAEVPPEPAPEETEEEPVDHNVAFEPVGMAGGDLELSAPFEITT
EARNTMILSSLKRVCAAGADGASSALWVPLVSRLITRGLEGSDEGEPTEEAVRRGEALRE
VLFNFIKGDLQTRTELARIWLNEEWFAARRRKQMENRPYDRWLRLFLEHVSAASSNKDKE
LLQFLMDLPEIPVDEIHRLETMALNADQMQLGFSTLRELVILRPSVRPSSLDVLLGLSTH
EDKRVRNAAIMTLKKWVPDVAELSDTIVAFAVSVIERLEVAPAKEESQESKENGADHEGE
ADMAMDATPPPTEPKPPFALVKDARVIDRLDPPTTLSGVTQHVELLLALCVKETRLLKPL
FEHYPRMQPFAQESLEELIVPLMRALGIKHPGVLDLLGDFPAGSDKLVLRCIDILADKSK
LPSNIIALIKEVAAKRDLDSRFYAIIVPECGKAEIVRYLPRVISLLDGTPQKKAAIRSIF
LSVIAPPAHFSSINSLRTRSDSLTPVELMTYLHKHDKEIGIKNTIEAISICFSMADGFRP
EVLAAFMQQIVDEPTLPNLFLRTVIQAVTTYKSLQPFVSTTLLSRLITKKIWTVGPLWEG
FIRLAKAIAPNSFAALLQLPKEQLAELVQKQPTMREPLRDYVVKKGGANNARMAAVLGAL
DEPSGAEDHIASSAGGTPAP