Protein Info for mRNA_8036 in Rhodosporidium toruloides IFO0880

Name: 16404
Annotation: K01942 HLCS biotin--protein ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 667 PF09825: BPL_N" amino acids 4 to 371 (368 residues), 355.7 bits, see alignment E=3.3e-110 TIGR00121: biotin--[acetyl-CoA-carboxylase] ligase" amino acids 386 to 607 (222 residues), 102.5 bits, see alignment E=1.3e-33 PF03099: BPL_LplA_LipB" amino acids 387 to 528 (142 residues), 89.5 bits, see alignment E=1.8e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (667 amino acids)

>mRNA_8036 K01942 HLCS biotin--protein ligase (Rhodosporidium toruloides IFO0880)
MAKLNVLVYDGSGVSAASRDNLVRCLRLFLGQRYDVQLVTPKTIKSEPWTNNCALLVLPG
GRDLPYLHDLGGTGNKRIREWVEQGGSYLGICAGAYYACSSIAFEVGTPLEVAGERELAF
FDGVCRGTVFPGFQYDSDAGARQVTLELNRGAWRDYWPQSPERCEVWYNGGGAFIPARRP
GHGTELSSETAVALATYSDLDDGPAAGVLCSVGRGKALLWGTHPEHSAGSTGDAAVDAAR
ERDRLGQIRASLSALGLEVADAPQTPPRLHPIFLASTDAELLQGTAEALATASKPYGPGR
ALFEDRNDNFVLHEASAAARLLHEARHPIDPVSDDSHDLAGSEKDLCIFDEGLPAQEVSP
LFDFHLFFSRLAASRGLPQFGRILMYSEVVTSTQTMLDKNDAFLAKLPDGLACVASHQVA
GRGRGGNAWISPAGCLQFSLVARLPASASAKIVFVQYLFGLAVVEAIRGTPGYEELGVRL
KWPNDIYADLGAAAEGHGQERYRKIGGILVNSSFSGDTFSLIVGCGINTSNPRPTTSVND
LINLSNRIRGTNLALFRPETLLALILDKFSEMWPTFIEAGFEPFTDRYLSAWIHSNQVVT
LDSTSQRVRILGITPDYGLLRTAPVNDYSYEDYLQPASSRASQRFVDLQPDGNRFDILKG
LIYAKSG