Protein Info for mRNA_8070 in Rhodosporidium toruloides IFO0880

Name: 16438
Annotation: KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1095 transmembrane" amino acids 885 to 892 (8 residues), see Phobius details amino acids 907 to 927 (21 residues), see Phobius details amino acids 1066 to 1085 (20 residues), see Phobius details PF01388: ARID" amino acids 288 to 376 (89 residues), 64 bits, see alignment E=8.5e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1095 amino acids)

>mRNA_8070 KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain (Rhodosporidium toruloides IFO0880)
MYAQQAQGQQYPQPGTNGGACPSQQVNAFGTQQLGLQAGAYGQQQQGQGQAGNAGNMFAG
QAGGNSGAAGQAYGQNGGQPFASANAFATGGTSSAPYGAGSPAVSTSNLLQQQLAAQQAA
FSQNPSAQQNQPNLAQQQYMQSMQQQQMYQQARNAQQQQQQSSPFANPSLPAGSQPPSQT
SQASPPPSSQQRPPGQTMTQQEVQNALRGVNLNGMTQERFQQLTPIQQAAIREVMMSRSR
AQQQASLGLGMPGATATPPRPAPTQPNGLPTPAIGGAPATPAAPQTNVFLKTLTEFYAKR
GVPFAGPPTVEGRTIDLARMFAAVTQGGGFNGVTTNRKWGLVATALNFPAATPEQHPPDR
LQALATAYQQTLLPFEMNWQQVQRMRAAASAAANASSPNGAAPSPLSATTPAPSLPAPGT
PQNLAMPPPPRASATPAPAAAPSPFALPSQPPTSAPSPALPVAAASPASFPASAGASRPT
TAGTGQAPTSGLAESVKVEGAPTAASPATAAASTSTAAPPAASSSDTSTKPAEPAVPPRR
KRRRIEYRPLARPLDTHGGQDLQLVEQAYTRAEKARPARKLPDLGLVDVHSLTMSLRSRM
ATEVAYALNVLTLISLQMTTEEKGMGLRFPFEKCPELLEELLELSEETAFGLDQENEARG
GSETAKGKEVAQEPQTYRELFRLIEEQANELDPPHARPHASTADDSDSILRPGETALAVV
NVLRNLALAENNARYIAQNQRIAELFIRVASLPLKDPSDPAPPHWPARVSAADSMSLKKT
AIELLSQVGADVELDSLSPSTAQQALDLVLFFIRDAELQREAFAFDLSTTPSMMSRMHQP
HAGSTTAIPPYLHLGLSACARLALKDRNRSVIARLLDPDDLYRIFISLVALLPISEKDFQ
IMTFETGLLFVHGAIMSMYNLAFLAPASVKARLRSDPKIHKSLFRIVRRLAGTQVQSNED
DIYLLLANRSIAILQLLDDGGEAGGGKKKGAPVSAAQADLPWYGMSMSGLDDDEGGSSDN
AGDEAEDGSADKGINGDSASSEATSRRNGHEAKTAPILAGDSRQLYEYFASSSMPLVLPS
LIAMADGTRSRKRRK