Protein Info for mRNA_8096 in Rhodosporidium toruloides IFO0880

Name: 16464
Annotation: K13338 PEX1 peroxin-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1056 PF09262: PEX-1N" amino acids 114 to 188 (75 residues), 89.8 bits, see alignment 7.7e-29 PF00004: AAA" amino acids 451 to 575 (125 residues), 39.1 bits, see alignment E=5.8e-13 amino acids 729 to 855 (127 residues), 149.5 bits, see alignment E=4.4e-47 PF17862: AAA_lid_3" amino acids 881 to 913 (33 residues), 30.7 bits, see alignment (E = 1.3e-10)

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1056 amino acids)

>mRNA_8096 K13338 PEX1 peroxin-1 (Rhodosporidium toruloides IFO0880)
MGRSAVVHFTPLRNCLANLPLSLHGPLNQRGVAPQSIAVQLSFKHNGKPQQVVLGWTGLP
ASVAPPVQGSRGTAALAQDRIEMDPQFAAMLNVGLSEGMTVNIELLRDLPHATAVNVTPS
TADDWEILETNAEFVEMYLLNQVRAVKEGMMVGCWVGSSLIRFLVDSTVPAASPAVLLTS
STELIVAPKSRHAPPPASSKTHDLSASHSTSSAPTSAAAAEWEQARRRLLRLLPLSPAPP
EAAPTTESSSHHDEHGSIYVCPSLARVAKKAFPSGLGRFTIAHHARPTGKGTATIDAPPS
SDSTGPSGGEATSPGAASAGGGGNEHVLAEVRVVESAKVPTGHVWMSEALRRDIGIKKGD
GAFELVRLGAPLSSAARKARQAQREKDSYASSSKTVSTSKSPAEPAPTPAPSLAGIDKPL
TQLRSHIVNSLAARQLSRSAKGSSAAGAPGVLVTGASGAGKTALVKMVAEEMEKDERVLS
RTIYVDCSKHADERLPTLKGRMKDWFDEACWHAPAVLVLDNLDRMIAAEVEHADSFPAVH
LANTFLSLALPALASRPIVLIATAQGSTSLHPLLSSTHLLGETVSLRGPDKTARRDILNV
LVKAKTSSSDLTAPKLNYASIAAVTEGYLPADLRDLVDRAVQQAAIRSMSSPLSSSSSAL
ELTADDFTAAQQGFVPLSLRDVKLQKSEVQWADIGGLTEARKTLRETLEWPTKYGAIFAS
CPLRLRSGLLLYGYPGCGKTLLASAVAKECGLNFISVKGPEILNKYIGASEKSVRDLFER
AQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDL
IDPALLRPGRLDKSVLCDMPNEQDRLEIMESAARKIHLSPSVSLARYAAQTAGFSGADLQ
ALIYNAHLDAIHATIAPAVDANGQVEGTGAGGKRDEEGGDIKYVVLGGKEDEKVLSRAEQ
ATVNKRLEQIMSAMKEASRSKTKKAAATSASPASRAPTVVEDFHLQKSLQTTRPSVPTEE
LARLRRIYSEFVSGRSAGGLPSGEASDEVGGRASLM