Protein Info for mRNA_8113 in Rhodosporidium toruloides IFO0880

Name: 16481
Annotation: HMMPfam-Thioesterase-like superfamily-PF13279,SUPERFAMILY--SSF54637

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF13279: 4HBT_2" amino acids 78 to 219 (142 residues), 47.7 bits, see alignment E=1.1e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>mRNA_8113 HMMPfam-Thioesterase-like superfamily-PF13279,SUPERFAMILY--SSF54637 (Rhodosporidium toruloides IFO0880)
MSTSPLPTLGNPLDVEAYQSGRESALKWAKENGYSDECMVEVQVAWGEQGESANLLAKED
GVRDTADLVGATLSPSADANAHVNNAVYFRWLETGRLNFMRVLGSHLDPQAAKDLSGSGK
GKGVILARITFDYRVRPGLICFLACSWRGDGLLTASDGAQKPTFHPDNLLILHKPVQVSA
KKMILQASVYSYAQQTVVGTSDSVMVGYDYDAGKSCAWSPQLVELLVERGAEKVESSGKA
KL