Protein Info for mRNA_8151 in Rhodosporidium toruloides IFO0880

Name: 16519
Annotation: K19846 SPA2 protein SPA2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1111 PF08518: GIT_SHD" amino acids 108 to 135 (28 residues), 48.1 bits, see alignment (E = 7.3e-17) amino acids 162 to 188 (27 residues), 36.4 bits, see alignment (E = 3.1e-13) PF12205: GIT1_C" amino acids 994 to 1100 (107 residues), 27.8 bits, see alignment E=2.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1111 amino acids)

>mRNA_8151 K19846 SPA2 protein SPA2 (Rhodosporidium toruloides IFO0880)
MSFRGAQGGPRPQNPPAPGPAPQDAYPYRQQPPQQPGAGPPPPSQQQQPRPAPQPPTAVQ
VPAGGSANKPPALTLEQSKQVARTHYTALKGWLHEQGALAGGSTRSNAREKLTRLTRQQF
QELSTDVYDELMRRIEDSNSGQPGQQPFLAVRPDFHPKRNQARQKLATLPLLRFRDLASD
VYFELDRRYPEFADEDNASLPYSTPTGGYSSPISRADSLTSTNAKPGPSSISSPPPTADR
RAPTPTSAAASPALSSAHIPPPITVPAGNDVVVPNKSTMVVEDPSPSPSIHRGPSQPSSG
PTSPADPAHALTSSANIPPASVSSTSGGFNYGSGGGPASASLRSPPLSGHEDRGMQSLQS
SAGPGSGLNRASEASSVGTNGRFFGGYAGSQAGASEAVRRSWEGEPLDKIRSSYEYKLTM
LQNRVSELERENEELKASREDGDRWEGERRQLEQRLDEQSSRLRSLQQENETLRSSASRS
PTSSASDAQLRTRLHEAEELASELRGEVSSLVDEIRQVSERADELQAEVEREKEGREKAE
GEAKTWKERWQAVKLELRNVKATSQLFSSSISVDADYMPASSDGLLNDTSVAAFQTSIDD
LLQAARSKEPTSILPAARAVVNACEKIDVDVQAIPHSRLASLPPSDQDLVESLKAKINAT
LSNLMTAVKNHATSFGVSPVSLVDAAASHLATTVVELVRILKIRRTTGGSSGRTRDSLDP
SAAFGGGSFRNGGPSFAREPMPPLHEDAQAQGEDDTISIPVPSSSSPAPPAPPAKERAVS
PTPSQVERKDKGYLSGGMSSLLGGGSVKHALEAIGISGNKRNSVDTLASEAKGKERESGT
TAMSMATDSTHSFASPQQQSHDRYGHEDRQEYASPQQYDQRQPSFESSRSAASPALSHPQ
YERSPSFQDQHQGNLPYDERGPSFEYGSQSQGRPSSEFGYNGQQQPYHYQDQQYGGGDNA
YGGEDHGAGGYGPSSPGMRGHERDPEELRSYIENQTEAIVHSIQSLLSAIRSGAQSSELN
ENLTQIITIVSSIVAISQEALPDHARDEGDAILQDLTTHCDKLSEMQSQAAGAGPDAFTK
QTKQAMAAASFGVAKSLKQLSLFLFPSESGI