Protein Info for mRNA_8155 in Rhodosporidium toruloides IFO0880

Name: 16523
Annotation: K15361 WDR48, UAF1 WD repeat-containing protein 48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1291 PF00400: WD40" amino acids 268 to 297 (30 residues), 25.5 bits, see alignment (E = 1.9e-09) amino acids 348 to 384 (37 residues), 23.2 bits, see alignment (E = 9.9e-09) PF11816: DUF3337" amino acids 1100 to 1282 (183 residues), 173.5 bits, see alignment E=3.9e-55

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1291 amino acids)

>mRNA_8155 K15361 WDR48, UAF1 WD repeat-containing protein 48 (Rhodosporidium toruloides IFO0880)
MIPPPPPRRVSYVIPTPAAPPPLLALPPLSVPRRGETTPLFSFTGEYAVQSRHKYSQGDD
AHPRHRLAVQALALDFSTPLSHPDGTDGEHETPGGILYTGGRDGLLCSWELGLPTKARRR
PYGRGDVEEDEENSADSDDFDDVVAATSALELESVEPRRPSKARAFSTSTAATTRLSLRN
GQTTGDFPPIPHQDRWQIDEDALKRLSSPPKARFHQCIQSHTDWVNDIVLANYNRTLVSA
SSDSLVLAWSPHSQDHQEQVTPTPIGRHADYVRCLATGRDSTWVASGGFDRKIKLWDIGE
GRPSAPLVELPSPPGSIYSLGTTPSGSLLAAGTPERVVRVWDPRSQKQVSRLGGHTDNIR
AVLMAEDGKWLLSASSDSTVKLWSLAAQKCLHTFSHHASAAWSLFSQHPSLEVFYTGDRD
GNLCKIDIEGTGDPAEGECIVLARDGPDDPSDRTGNEGITQMVAQDDCWVWAAAGGSGVK
RWKDVPRKMNRSRAILRKARENGELAVPEDRAVESPVPLSTSPMAIAASPSPTPPSPTSP
SSPERERPTPTVSFLEGLTSPLNRTSSSPTPRLPLAVQGVTPTHRPSSLRTPRQSLASAT
RPSFDQSLSTNSTTCCDIPYDSLVPLTLPEDTYFAPAFIRHYRDPDAATIYSTVSGVSGG
PHRPHLVAASSSSYRRAQSIIETTHDATNIAQRDYFDRESAAEAVPLRTSPDDVIEGGYG
LIRSELLNDRQHALTQDADDEIALWDIIRGICVGVFPAKDLKDALAKRRPSDAGSTSALS
VASSRGHGFDLLDYVRERIEGEVTIAPWCKCDTRIGSLTIHLDEARVFDAEAYIDECGVG
PSDDFPPDHRLSLGKWVLRQLFDGFVEAEMALRVPTGAPPPSALFGNDAPQGDTTPTPNF
IPLPSVTSPPTSIPKGSRTPGMTIALATPATKRAVLPDLPPLAIPPTSPRQHGAELAPIP
QSPFVQTPVPAGGRTPTLDRPEGDYFSLRPSVPPDSATSAPLASPTMSSRTSEPPTPNAT
SVPLPTPGGTLMGRLRFLGKNSKKASTQADSQPAAAPVPPPVVHDGRSLEEQQQQQILDT
VFARPLAPCPFVEAPPIHYAPDMAIIISEETGDAWSVKYRGLVGTSYEDMGVLEQKAPLW
LLDFLLGNRIPVKEPVKVSFILQPWKGEGYQSLPELPNNNARLTANRSLRIRKVCSYVAD
KLDLRRPSRAPSIMDGGAGSAEPSAPPSPAPAVGFTLYGDVFNPEKEIEILVNGEVLPTN
VTLATVRHCMWKSGGDVVFTYRSKKHSLDEE