Protein Info for mRNA_8160 in Rhodosporidium toruloides IFO0880

Name: 16528
Annotation: K01873 VARS, valS valyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1129 transmembrane" amino acids 689 to 709 (21 residues), see Phobius details PF00133: tRNA-synt_1" amino acids 198 to 801 (604 residues), 686.7 bits, see alignment E=5.2e-210 TIGR00422: valine--tRNA ligase" amino acids 200 to 1107 (908 residues), 987.3 bits, see alignment E=3.1e-301 PF09334: tRNA-synt_1g" amino acids 205 to 357 (153 residues), 30.9 bits, see alignment E=2.6e-11 PF13603: tRNA-synt_1_2" amino acids 426 to 486 (61 residues), 27.3 bits, see alignment 5.1e-10 PF08264: Anticodon_1" amino acids 847 to 996 (150 residues), 128.4 bits, see alignment E=4.9e-41

Best Hits

KEGG orthology group: K01873, valyl-tRNA synthetase [EC: 6.1.1.9] (inferred from 68% identity to lbc:LACBIDRAFT_303702)

Predicted SEED Role

"Valyl-tRNA synthetase (EC 6.1.1.9)" (EC 6.1.1.9)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.1.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1129 amino acids)

>mRNA_8160 K01873 VARS, valS valyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MLQRATRAVLNRLPRPTRPLAFSLHLSPPTRTMSTTPAPTAPPVPGATEQSTQQPAGDVP
LDANGQPLTKSALKRLQKEKDLAAKKALKQAQNQGKPAPAAQAGEGKKKEKPAKKEEVVE
EPPYGETQDGDKKDLSRPMAAGYNPDHVEKSWYSWWRSHNFFVPAIPSSSPSEFSHFDAN
PQFVPREGSGDVDWSKIDPEKTFVIPAPPPNVTGSLHIGHALAFGLQDTLIRWHRMRGYT
TLFVPGYDHAGISTQSVVEKRLAKLEGLSRHDLGREKFLERCMAWKEEYQTRITNQICRL
GVSCDWDRVAFTMNPQLSKAVAETFVRLHDDGIIYRANRLVNWCVAMNTTLSNLEVDQKV
LTGRTQLPVPGYDPKEKFEFGVITSFAYPLEGSDEKIVIATTRPETLLGDTAIAVHPDDE
RYKHLHGKYALHPFLDRRLPIITDSIAVDMSFGTGAVKMTPAHDPNDYEVGMRHKLDFIN
ILNDDGTLNANAGPEFEGMKRFHARKKVVEEMKKKGLYVGDAENPMSIPVCSKSGDFIES
VMKPQWWVSCKALADKAIERTKAGELKIRPAASEGDWYRWLEGIQDWCISRQLWWGHRAP
AYFVNLEGEAADRMNNDFWVSGRDRAEAESRAAAKFPNKQFTLEQDDDVLDTWFSSGLWP
FSIQGWPDKTPDLEHFYPSSLLETGWDILFFWVARMVLLGIYLTGQVPFSEVFCHAMIRD
AHGRKMSKSLGNVIDPIDVIEGASLEALHAQLRTGNLAAKEVELAEKGQKKDFPNGIPQC
GTDALRFALANYSSTGRDINLEILRVEGYRKFCNKLWNATKFAMLKLEGDFVPPQSEKPT
GQESLAEKWILHKLNLAAGKVNAALHDRNFMSATSDAYAFWLYEICDVYIEAIKLITDPA
AKDVDARRSAQNTLYTVLDNGLRLLHPFMPFVTEELWQRLPRRATDQTQSIMLAKFPEAS
ADRDFPEAEKEFDLAFNAVRAIRSMATSYNLNSKLQVFLLARNADYAATLRKSTDAISVL
IKGCTSFTIVEKEDELPEGCVGELVSQDLTAYLLLKGVIDANAEIAKSEKRLAFAQGALQ
KLEAQRSAPNYAQTRPENVQAREAAKVDEWKTEIDALEKAIAKFEKLRV