Protein Info for mRNA_8171 in Rhodosporidium toruloides IFO0880

Name: 16539
Annotation: HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details PF00226: DnaJ" amino acids 99 to 163 (65 residues), 36.7 bits, see alignment E=1.9e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>mRNA_8171 HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565 (Rhodosporidium toruloides IFO0880)
MAGSRPSSGVGGLSANLISVFGWSMIPSFLTSAILTLFYRFFPSSRPTVPPRAAPQHVAA
ANARAQRHYRRVRITLIAAYLAYSVLSIYWSQARGAEQNYYTLLDLSRDLVDRDGASVVK
SHWRRLARVYHPDKVGKEGEAFFVLLRRGVEVLEDENKRLAYERFGPGVQEWGDKLVTKR
EFLAKGTLYAGIFWGFAFGSIAVFTFFRKSERRYNFWRYLSLALCLSLEFHLLFRSSPSP
TFSFVFPHRLPYQHIALLRQLFISTSMAMSQLGPLLFPETPTHFAAASPASSEAEQYARA
VADVDSLKPLIERLMRVTAQAELEASVLQSLELRPLMESVKPDPDVPGVEERKVIRKLVD
GMVAAWEDSQLKNNPRTARAWDEALRRPAQKAAREKEPTKEDADKDEVVEEVEVEEDDEA
DARSEASASTAAGYDVASSDEAESATASTNAVDDTPLSLDSAVIPPPVTLLASPPTSPRT
GSADLAIPLPVLEAVMREVGGGANEPAGLTVRGKKDAEGEKGEMAKRDGTGLQLSAEQLD
ARLPTPPPDE