Protein Info for mRNA_8188 in Rhodosporidium toruloides IFO0880

Name: 16556
Annotation: K05012 CLCN3_4_5 chloride channel 3/4/5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1010 transmembrane" amino acids 189 to 209 (21 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 410 to 432 (23 residues), see Phobius details amino acids 439 to 456 (18 residues), see Phobius details amino acids 468 to 492 (25 residues), see Phobius details amino acids 509 to 521 (13 residues), see Phobius details amino acids 545 to 564 (20 residues), see Phobius details amino acids 583 to 603 (21 residues), see Phobius details amino acids 636 to 659 (24 residues), see Phobius details amino acids 666 to 688 (23 residues), see Phobius details amino acids 712 to 734 (23 residues), see Phobius details amino acids 741 to 765 (25 residues), see Phobius details PF00654: Voltage_CLC" amino acids 389 to 770 (382 residues), 291.4 bits, see alignment E=5.9e-91

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1010 amino acids)

>mRNA_8188 K05012 CLCN3_4_5 chloride channel 3/4/5 (Rhodosporidium toruloides IFO0880)
MPSHPRSPLPRPPPLLPPLSTTTSPTYTPLASPLDERRPLLRTARSFGADDLRRRSHQIS
DLLFRHGEGDAQAGLGGLEDAFNGTDGSERRAEDEREGRGLSRARSSFFGSRRGSLSRLR
TGGGGYDGEFKAELEGEAGNGVRSWYDNYTAIDWIHDTIKHSLRLRRLRRLKRTQGLRGQ
LINLWDGFQGWLLVTIVGFVTACIAFSIIRAEMWLFDLKEGYCAAGWTRAKRFCCRAESA
PEKAFGTFVLRGWAPSAVEEGGECEAWTTWVDVWRRWTGEGEGAGEAASYIAYIAIALVF
AVLASVLTIYFTASTSVYSSKDSLASPRLGNTAKLADLPGASASPPASTSKYGATDQVVS
ASTSEASLDTALQGHAEPVAVPRTRKTLYYAAGSGIPEIKTILSGFVIRGYLGSWTLGVK
SVGLALSVASGLSLGKEGPFVHIASCVANIVSRFWRKYDRNEGKRREVLSAACAAGVAVS
FGAPVGGVLFSLEEVSYYFPPRTMLRSFWCAMIAAMTLKMFDPFGSGKIVLFAVTYDKDW
HSFELLGFLFLAIFGGVYGACFCRANIAWTKHVRNGTFLKSHPIVEVALVTLVTACIAFY
NPWSKMGGTELISSLFSECYKSERLSGLCVTSPSQVGPLVLSLGAALVLKAALTTITFGL
KLPAGIFIPTLAVGALAGRIAGLGVEVLHAKYPRSFVFEACRMDGESGPLPFGQACVLPG
VWAMIGAAAALAGVTRTTVSLAVIVFELTGTLTYSVPTMLAVLLAKTVADSIEPRSIYDL
VIEVADLPYLDAKAEYVHDSTPHDILDAGAPIISLDTDNTVSSLYSQLAALYASGTSSGF
PLVASDDGGSPRMFGYIGSKELEHGLSLARAQGLSDSTTCTFRVAQGARRGLAAEMSAAA
TPGLGGGAESETFDLSWLTDQAPLTVSARSPMELIHEMFVKLGSRYVVVVDERGCYLGPI
EKNRYLLYLRWLEKRIHEKTSKSKWFAQADAADGARDGVRRGRSEAREVA