Protein Info for mRNA_8192 in Rhodosporidium toruloides IFO0880

Name: 16560
Annotation: K12780 REC8 meiotic recombination protein REC8, fungi type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF04825: Rad21_Rec8_N" amino acids 1 to 99 (99 residues), 92.7 bits, see alignment E=1.7e-30 PF04824: Rad21_Rec8" amino acids 712 to 760 (49 residues), 34.5 bits, see alignment 1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>mRNA_8192 K12780 REC8 meiotic recombination protein REC8, fungi type (Rhodosporidium toruloides IFO0880)
MFYNTEILTSRKGGFAIFWLAATVGSRGGTAVRKLSKKELLSCNVVKACEKVAAPDEPLA
LRLSSNLMVGIARVYQQQYTIYASDVTHMHATLKKVITDSAFNLPDITVQPEVAPPPAPS
EGFKEPKGKEAAGGGGLNLAFNKGIALTGFDPDWDLGILWRLPGEEGSDEMEGLEEGMFT
SPAPSIAGAPAAERKPKGAHQAREADITLAEPHLQDYMLRGFEGADEFGQAGFEGEGELG
AIFGEEEQGLLYGISPELDAAIRAGSAGRGSAAGSARGPAGFGASSSAVGYGADLGGFDD
HFAGQEFGGGGEEFFPPAQLPGEGEETFAERVRKEHEEAQARLEQAGGRRSATPLGGEIN
LSGEFVSVGDGTPSTTTRKRVSDALEQAQTKAADTKKAAKKAKRAKLIPIDRSTELTDDQ
FRSMRATYADRMEAERKKADKAREEREAHQKAMDAIFGVPAAFQIPGLAEFWKETVVGQM
APFEGGKAADEKKRRAAGLSPTRRKARKTEEAPEIEQSREAKKRLSEQPGFGADFGGFDF
GAQDFFAGQEFGGGEEYARDGDMGGFEHGIFDQDVEIGRAASAAGLTGSGRPSMLPWAAE
LPTSDAGGAGGFGFEVGGPSSAAGGTRVSMETPLPRGSAQRRSRTPSLHASPLPGGSVEA
LLEEGGELVGFEGGSPMARSGEADGEEVLPETDSYRFLNYARRQAEGLPAGEQLFFSDIV
PTAVTTPTIAAAAFYHLLTLAMKGEVRVEQEDPYGEIAVEV