Protein Info for mRNA_8228 in Rhodosporidium toruloides IFO0880

Name: 16596
Annotation: K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 924 PF04855: SNF5" amino acids 244 to 506 (263 residues), 233.9 bits, see alignment E=1.2e-73

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (924 amino acids)

>mRNA_8228 K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (Rhodosporidium toruloides IFO0880)
MNNTINGFATGGLQAMQGLQGYPGQAMVGSGTPLQAQQRLDASSTSSTPFAFPGAPSGTL
VAFPPQPVLQSSSAMTPTQQALLMRSQQTARSAAGAPPLASSSSAAPQPTPPVAAPEIPH
DGGPPFKVAPHRAFTRVRETDPGEPFPSIAPNDQRRVKKWVERDAVYEEELMAAKQGFRR
DMGAFMEEVVREQDWLGPVMDPQMSRGQFRLRFGEDKVKEEANGKRGQLRRPIPLSKPYL
RSVATTPEVLIPIRLELESDMYKLRDTFTWNLREPTITPEIFASHLCADLRLPTNPFFND
IVAAVKRQLADAQLSATYEGHLGASSEEVREENRVWFEERLSKRRRIEKAMEDEEEEEEE
EAPMLATELLKNSPVPTDEMRVVIKLDITLDSIQLVDKFEWDISNPYNSPEAFAEAFTAE
LGLTGEFRTAIAHSIREQVDFYTKSLCILGWSKGLVIGDEDLRRDFLPSVSDPFRTDTAD
DYTPLLNQLQAEEVERHDREHEREIRRKRRQTKGRGVTLPDREPVRTHRTLVPRPLPGQV
APQYDDRGNKIFPQPELSLPYPLVAKAYPPKPVNVETSTASPLKMLTTKDKAGGAGGLAA
TAAANRFKKGQAGDGTESPAKKKRLPGRVDPEALGLHEHIIEGKWYCANCGVPASVAVGR
RKGPTGKDSLCGTCGKYFHRYKRQRPCVYTRDLETHMRYKAEEDAKNPKPKRGKASHAAA
SAHDLLDPLGSARTSGRATPVSQALSPVSSAHDDEDSDEEVSSVSRPGRRRRPAHYGSPD
TPFVHFDTDNSDEESVKAASPPATRLRRDLSAAASPPPSSRATPSAPPRTQTVPPALPQA
PPPPPEWLNKAAADLRARQVDDRFDLIPRPRPTNPSVQDWRIRCLDCPGKLYNLGPGETL
DGFTVHFKNRHHRANVEARLARER