Protein Info for mRNA_8266 in Rhodosporidium toruloides IFO0880

Name: 16634
Annotation: K07297 ADIPOR adiponectin receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 49 to 70 (22 residues), see Phobius details amino acids 110 to 134 (25 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details PF03006: HlyIII" amino acids 42 to 291 (250 residues), 187.8 bits, see alignment E=2.6e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>mRNA_8266 K07297 ADIPOR adiponectin receptor (Rhodosporidium toruloides IFO0880)
MGQHTRLLTFDQLEPWQKDNHWITGGYRPLLRSYRACLRSIFASHNETVNIWTHLIGSAI
AVLTAFYLLLDLSPSGTLTHGRKGWLAPFAGIPYPFPNAAQPSVEIWDTIGFAAFLVSAS
VCLGFSAFFHTFVAHSKEVAQRWNRLDYVGIVVLISGTFVPMVHYGFACDSHLRNLYIGL
IYTFAAATTATVVSPHAQTPQFRRLRTYIFIALGLSAVVPVGHAVWRYGLEGASANISLF
WLALGGALYIIGALLYAERCPERFSPGTFNTLFSSHQIFHVLILLAAWSHWTAITEEFRY
WHGEREGVC