Protein Info for mRNA_8292 in Rhodosporidium toruloides IFO0880

Name: 16660
Annotation: HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF09349: OHCU_decarbox" amino acids 23 to 207 (185 residues), 119.6 bits, see alignment E=9e-39

Best Hits

KEGG orthology group: None (inferred from 46% identity to cne:CNA06190)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>mRNA_8292 HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694 (Rhodosporidium toruloides IFO0880)
MNGLPPPRIDILVHSPSPSVYRPVLEQLLEPSPPLSTLLAPQLHERISSLPGSSKPKSYS
DLLDLAAQVVDEWDVEDQAAFLAAHPRIGETKNLSKASEGEQAPQAGQQATPAQVLKRLQ
VLNSLYEDAFPGLRFITFVNGRSRAEIVPELESLLSLSLPPPTASEAEPRLSDVRKQLRI
SPAGSKPWRDELKRGLRDMWLIAKSRTEKMGVK