Protein Info for mRNA_8301 in Rhodosporidium toruloides IFO0880

Name: 16669
Annotation: K20361 USO1 intracellular protein transport protein USO1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1424 PF04869: Uso1_p115_head" amino acids 419 to 735 (317 residues), 226.8 bits, see alignment E=3.9e-71 PF04871: Uso1_p115_C" amino acids 759 to 865 (107 residues), 51.3 bits, see alignment 1.6e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1424 amino acids)

>mRNA_8301 K20361 USO1 intracellular protein transport protein USO1 (Rhodosporidium toruloides IFO0880)
MFSTLRAGYNSLQATARPTSAEDTIEKLCERLLNGTQREDRRAALLGLKGLSRDWKSEVG
ARALPILLGVLEDDAAEDTEMAKAVVETLSLLCEVEEVEGRPVRDDSGLRNTDVFLATPT
ALHTLLKLLTPSHFYLRFFSLQLLGILLANRPQQVQQYVLTAAGGIGRLVETLDDAREII
RNESLLLIIALTTQNADIQKLLAFEGAFDKLFGIVRSEGGIGAGGIVVQDCLAAVGGLLR
WNVSNQNYFRETSCIPLLAPLLLFPRPNALNAQSLATFAFQSWSEQKVINAGLVISLVRM
LVGGAGGSGRSQNQDALLKTGLTRCLIELALASNAPAVLKSQSLNALADIMRSSADNQTL
LTTLIVTPLIPPAGPSSPETYADDTTSQHDGQPRASVDGQSQHHDHDEAAQRAASKWRRG
TSVPAVVAVTDLAVHGDGTPGREGLRVRAAAANLFTSYAAGSTENQLGILSTMIAPPPEE
ASFSPGSIILTALRTFPTPTRNESFDSYVPFFACLLFSHLVMHSEVCKEVARKIYFQGDE
PTPGGMGDEDDRTTLVGVLVGNLMMAQREQAQSANAGLGPERGLEWSRVMVGYLTSLSLW
MWESPLTVKEFLSEGSNLQVLIQPITQSSGVDSVIQGLCTFLLGICYEYNREPGPISRET
LHPILHSRVGPDQFVSRILRLREDPRFRNVGPNVLELVDEDDTIAEDLGEEDGLWFDFSF
VEFLKTNYISVQRAILIDPQASSAMVRSMDGVSPEVLAALRASLAAQTKELDDLREALQS
LAQERDQERAAVEAEFASLSDSIVSLRSQLEEARQAKEEADREQEDLLVLLEELSEKRRR
DKKRMRKAGLDVSEDEDGADGDDDAASVAEEDAPEQVAPHPDSPAPAVQPAQPAALNFDA
PPDAASPTDGPAIVPAAPPAKTSDDAPAATTFTDDGSAAPDAPATQAVDTSLADAPAEPE
AASAEEPKAAEPKVVELREEQQKDVEQPQSEPKEDPTQLDEVSSSSIADAAKKTAEPEPQ
PKTAPPPPPPTSAPPPPKASAAPSAKARNRDSTGRMTFEPEVDDEIYARSGSSTPAPPPP
KTSAAPPPPRSSAFPSPRTRRALQSSTSSTSSKPATPLYNPFRQATPPPAAEQEKPQSPS
VAPPRPASAAGEASSAPAPPTAAPEAPVASAAEQPTDAAVGMASEAVEPATIAAMEATPE
PEASRRTSVDDRLAAAFGAFGSSTSFDPSPSPFHQPAAPSEEQDTSSLFGNSPSTQNDIA
SIFGLGSTPQPAARASETAAKVQEAPHAEQRKSPPPRDVASLFGGMAASAASLFGGHHAQ
SSNDSKSPPFDRSSAASPPAARPDASSLFGSTNGFASVPRQDAASPFARQDAPSPFARQG
AASPFGRQNATSPFQHASRQDGPAFNYGAAQQKAEVRDVSSLFG