Protein Info for mRNA_8303 in Rhodosporidium toruloides IFO0880

Name: 16671
Annotation: KOG1398 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 246 to 268 (23 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>mRNA_8303 KOG1398 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MPTRNTLARHLRTAHPSTEPFLRAFLLGYAAHSVPAVIRVLLSSLLSRTRKPPSQVLSDL
AKAVARGFHPRGLGVAFGVAIGGAKWAEEVVEPVVRSAYAAGVARARAVREGKGKARETE
FSLEAEQQRVVEDERNVKVLSTFVGSTISSLVALLILQSSKAYRRPARPTAQPVPDLQPD
FLISPYTPGPSSTPDPTPRNSRRIQSPTLDLTLFLFVRGTDTFLRYLYSRAPPTQPGKRG
ALIRLLASHGDTLVFWLACWRIMFSFFYSPQKLPPGYSKWIMQLARLDPRLLQLLRFARE
GRYVYGRDADAEVVRVCEGIAKANGKPLASVHPLHTKRIDCALVHGQVGAGTCEQNALKR
WVRAFLDCLVIYLPVHAIPQLLFNLRRILSQPSSSLARILLAASRSSTFLATFVASIYAS
VCLIRTRLPQLVPSVPQQPLDAGLCVMLGCAVCGFSVLIENKRRRREMALYVAPRALYAM
LDDLIPPSLLRGRVGDTLSTLLERLVFSFSAGTVITAAVHRPELVSGVVKGVTGFAVGRW
GGERGAKGVRR