Protein Info for mRNA_8325 in Rhodosporidium toruloides IFO0880

Name: 16693
Annotation: KOG1688 Golgi proteins involved in ER retention (RER)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 transmembrane" amino acids 64 to 83 (20 residues), see Phobius details amino acids 89 to 106 (18 residues), see Phobius details PF03248: Rer1" amino acids 5 to 126 (122 residues), 179.9 bits, see alignment E=1.8e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (131 amino acids)

>mRNA_8325 KOG1688 Golgi proteins involved in ER retention (RER) (Rhodosporidium toruloides IFO0880)
MLSGAIYLLNLFLAFITPKFDPALAADMAETEAEEGAPGLPTSQGDLQEDGEMRPFIRRL
PEFKFWHSATRAIAFSLIASFIPLFDVPVFWPILVMYFCLLTFITMRRQIAHMRKYKYLP
FDIGKKPTYGH