Protein Info for mRNA_8340 in Rhodosporidium toruloides IFO0880

Name: 16708
Annotation: K03254 EIF3A translation initiation factor 3 subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1070 PF01399: PCI" amino acids 387 to 509 (123 residues), 32.6 bits, see alignment E=5e-12

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 3 110 kDa subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1070 amino acids)

>mRNA_8340 K03254 EIF3A translation initiation factor 3 subunit A (Rhodosporidium toruloides IFO0880)
MLTTRPELVLRRADELLSVGQPMAALSSISEVFSSKRFRSTPLSTLEPIMVRFLELCVDL
RKGRTAKDGLILYKNVAQNTSVQSVEVTIQKLLELSRNKLTDALAKVDELEGEAAGEVED
LEAAETPESILLGLVSEEKSRDRTYRSIVTPWLRFLWESYRTALDILRNNARLEVLYQSV
CHEAFQFCLTHQRKTEFRRLCETLRSHLASSQKYTHQSHSINLNDPDTLQRHLDTRFQQL
STAVELELWQEAFRTAEDIHTLVGMSRRAPKASVMASFYDKMAKVFAVGNNFLFHAAAYG
KLYSLHSARVAIAAANNASDAQQQDAELEKLASRVLLSALVVPLGSGVEIGKRADGEEGE
SKGRLGRLASLIGLSSVPTRAGLINDALNRHALKRVSPELRSLYNILEVDFHPLSITSKI
EPILASLEKNPDTARYVAPLKDVVLARLFQQLAQVYASLKIDRVVKLASFQADGEKDVTR
RRVERYVTEACRRGDVDVTIDHATGSIKFDEELFGDEAGTVASTSANFDSVKTLQPSAST
LLRTHLTRLAQTLHSTLNAVAAPGSTPADAARAARESAFANLETAVEDERDLVIARTAII
KRRKELSDEQTARKEKEEAHARSIRAQQKAEEDARRQKEELKQRELERIRKEVEKVKADE
AKKVAESLIQSGLKVDKQKLPELSANDLVQLQVQQIEKDKKDLAQKLSSVHKRIDHLERA
FRREEIPLISQDYERQQARDREAFEAAQVQRAGQLRRQHAEGLAIKQRLQRILPDFEKFR
QVREKESREHYEAEKRRAAEALEEEKAERRRQVLEQKERERQEALEREREEAEQRAREEE
EARIRAEQEEREREELERVAERRRQMEAEAEAARKAALEQRLAERKADQERIAAQARREE
EALARRAGGGAAQRSASGPAPVGSAAWRASRDGASPAPSAGGERPRFNLQPRSTPPTGAD
ASAGERPRLNLQPRTAQADAPAGERPRLNLAPRTAPRPESPAAAPSPPSESRSSTPAGGR
YQPPGARAGAGSPAPGSDESRSSTPAGGRWVPPSQRAAQGQQPRNASSRW