Protein Info for mRNA_8345 in Rhodosporidium toruloides IFO0880

Name: 16713
Annotation: K00062 E1.1.1.116 D-arabinose 1-dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 PF00248: Aldo_ket_red" amino acids 30 to 355 (326 residues), 138.9 bits, see alignment E=1.1e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (411 amino acids)

>mRNA_8345 K00062 E1.1.1.116 D-arabinose 1-dehydrogenase (Rhodosporidium toruloides IFO0880)
MASTDLLTPRYPALDPKQGGITDGPLPLPPLVLGAGVYGYDYNSKETLLESSVPEQAMRL
AFRYGIRTLDTSPYYTTSERVVGDVLEKLRDEFPRESYQIITKIGRYGRTKEEGFDYSPS
RIRESVKNSMKLMKTDYLDGVYAHDVEFVSEQLADAGEEGFKVGENGEIKEEDLEKWGLR
EEDAGKIRGPGDEKVLAALKELFALKKEGVIRAVGFSGYPMPTLLRLARLIAHHLEPLDI
MQSYCHHTLQNTTLQTYYPLFVKAGVKQILVASPLSMGVLRSLPPPEWHPISPACRDATA
EAIKVCQSKGRRLEDVALGYGFTSVKPAGSKEGRDTPTVVGLSTLEEVHETMKVYHELYG
AGQESREGRRPGEGLGKSGSEVAKLQKELEKDVVDIFKAKGGYNWTWAVGV