Protein Info for mRNA_8350 in Rhodosporidium toruloides IFO0880

Name: 16718
Annotation: K11397 EAF1, VID21 chromatin modification-related protein VID21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 977 PF07529: HSA" amino acids 305 to 349 (45 residues), 43.2 bits, see alignment 4.1e-15 PF13921: Myb_DNA-bind_6" amino acids 687 to 737 (51 residues), 34.3 bits, see alignment 2.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (977 amino acids)

>mRNA_8350 K11397 EAF1, VID21 chromatin modification-related protein VID21 (Rhodosporidium toruloides IFO0880)
MIQGLEQFKQRFSDAKSLQQLDLSLPPLSPSPPPPSRTTTARPPVPATPAKPPPSSDVVN
DSDEDAEGEEEEDEEMAVAEALAPPGVSVTTSGAANGTAPRAGTETAATTPQPQISLTAP
SAPASTAVSPSPTPSTSQHPATVSPYLLQATQHTNPATTPPVAGVARPPFVPVPPYNSLF
GIEEISSDYASTLPPVPHDILRRRLNTSLLLRSNNKKASKSTAPSSSSQLIQPDLYKLHV
RAQHMGAKTFLGPGKRVHNALTTHEWQVGTDEMRSIRAFERIEQLKAERKWSFRQPKKQR
TGVVPKAHWDHVLDEMRWMQIDFRQETRWKVVTAYKLARACRAYVRASEDDRPALRVQVR
EPRRLSDEEVEARLRGEMPDEEKMEVEAGDEDASGAKAKKVDKGKGKEREMSEDVDADGE
EDADGEADDATPAPASAAQATAATSSGISTTKSTKSTPANPVVPVANAPPGAGKAGGSAG
NEATPAPSTSGMSRSQAQQLAAERADAQARHVQNLITFRRPIFDAPHDDTVVDPLFLATL
QEAAVEAASLPLDENPFLAYDFTNLFPDLPLYSDFTVASDPSLDRRVEDSSAWAGRLAHV
TRLLESKPLLVGTLEPSKTRLDKEDWAPGTGTFIEDIKEPIDPRETAPTSASALFAGRRP
KDAVLGDVLQKPAELPNAELRATTLLWLPEEDAMLLALQKQYGFNWNLISHVFNLATHRP
APDRREAWDVYDRWDRLVGPGSKKTLPDGTEIVRPPPDWMPPVDKTGKPLPIIGDGSKKK
ARHAAIMEAMKRAQKKRELAASKQNTGGFPRRVNMGMHESHNLPPRPTWSPMEWSVFRAE
QDQQKIRLRQQQAAAQAAAQQQQQQRLQQQGPPGQQGRHPQLMAAQAAAHASPNGTPAAL
PGSPSGAHAQLGVNGTPPIQMQQLPNGQTPQLTPEQLQMLQQRQRELLQAQAQAAAAQQA
AARAAQAQAQQVNGGAE