Protein Info for mRNA_8373 in Rhodosporidium toruloides IFO0880

Name: 16741
Annotation: KOG0504 FOG Ankyrin repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF12796: Ank_2" amino acids 209 to 280 (72 residues), 30.2 bits, see alignment E=1.2e-10 PF13637: Ank_4" amino acids 210 to 271 (62 residues), 25.3 bits, see alignment E=3.7e-09 PF13606: Ank_3" amino acids 251 to 276 (26 residues), 20.5 bits, see alignment (E = 9.4e-08) PF00023: Ank" amino acids 253 to 276 (24 residues), 20.9 bits, see alignment (E = 7.5e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>mRNA_8373 KOG0504 FOG Ankyrin repeat (Rhodosporidium toruloides IFO0880)
MSSDDPLADPLASTHVHDEPQKHVLRPRISDPWADKAVLAEPFSPGWDSAQGPLAGSEGE
GGLGQKEELDASRAEANGRPQDGNDNPSTTKEDSFAYPSSPPSASRPSALNPAAASFTPF
TPKPSPSAPLAMPAETASRSPSRTRSTSASTSVEAASSVTPKGAPSPLAQRTEEASSEAP
VERDERAHPVRTASTASSSKGYEPTVLRNLISTACQNGDLERLVSLMSRSGGEADGSNRF
TLANQTSPHTGLAPLHYAAQRGHVDVVKWLIEECGAMPELEDGDGEVRSALSARYARKLT
GLRTDPAAQGGSFRPSRRLSFSHLAGGRY