Protein Info for mRNA_8378 in Rhodosporidium toruloides IFO0880

Name: 16746
Annotation: KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 PF00153: Mito_carr" amino acids 18 to 87 (70 residues), 31.1 bits, see alignment E=8.9e-12 amino acids 216 to 305 (90 residues), 54.4 bits, see alignment E=4.9e-19

Best Hits

Swiss-Prot: 60% identical to YHM2_YEAST: Citrate/oxoglutarate carrier protein (YHM2) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 74% identity to scm:SCHCODRAFT_80751)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>mRNA_8378 KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins (Rhodosporidium toruloides IFO0880)
MAIDAAPAVPGQKKQIQWSNIALGGIMNMFEVTTLGQPLEVVKTQMASARGDTMGQALRT
VWSRGGVLGFYQGLIPWAWIEASTKGAVLLFAAAEIEGVAMTAGIGPAAAGLLGGMGGGV
AQAYATVGFCTCMKTAEITRSKMAVGGQNPPSTWQLFAEKWRKEGLRGINKGVNAVALRQ
MTNWGSRMGFARLAEGAIRDARGIPEDKKLGALDRIAASTVGGALGCWNQPIEVVRVEMQ
SMAKGASSDPSRPAKPTIANTLAYIYRENGIKGLYRGVTPRIGLGIWQTVCMVSFADVVK
DWLAANKK