Protein Info for mRNA_8380 in Rhodosporidium toruloides IFO0880

Name: 16748
Annotation: KOG4197 FOG PPR repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1576 transmembrane" amino acids 843 to 862 (20 residues), see Phobius details amino acids 927 to 947 (21 residues), see Phobius details amino acids 967 to 986 (20 residues), see Phobius details PF13812: PPR_3" amino acids 892 to 937 (46 residues), 20.6 bits, see alignment (E = 9.7e-08) amino acids 911 to 972 (62 residues), 21.7 bits, see alignment (E = 4.5e-08) TIGR00756: pentatricopeptide repeat domain" amino acids 926 to 950 (25 residues), 16.2 bits, see alignment (E = 4.4e-07) amino acids 1046 to 1078 (33 residues), 22.6 bits, see alignment (E = 4.2e-09) PF01535: PPR" amino acids 926 to 950 (25 residues), 15.5 bits, see alignment (E = 4.1e-06) amino acids 999 to 1022 (24 residues), 18.3 bits, see alignment (E = 5.5e-07) amino acids 1045 to 1074 (30 residues), 17.3 bits, see alignment (E = 1.2e-06) PF13041: PPR_2" amino acids 960 to 1010 (51 residues), 32.7 bits, see alignment (E = 1.7e-11) PF12854: PPR_1" amino acids 992 to 1021 (30 residues), 27.2 bits, see alignment (E = 6.2e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1576 amino acids)

>mRNA_8380 KOG4197 FOG PPR repeat (Rhodosporidium toruloides IFO0880)
MKETDLVQLLEESRPRTLSVWLHLPLEGLREVASWLQTAALPQPARHARRTSSSPSSDLT
RRDWCGHSGMTRLVSPALRRAPSVPLACCCSCRSSTPAKARSAPPDAAPYSTALDLASTG
QARPPMAPPPPYLFRHPGGFGFFSRSLPKKPPSPAIPPLQLDTPSFWVLHSTPQFQPDWR
HSSFAAPPPPPPKPQLEPFDVRSWRPSSQSYAPPLLPSRATIAAGGLRRSMARIGGGKCV
CGRVRHSCLRCRASSTSAGVGAAVQRRLEEEAAVVAAERRPEGDGSGSASASSGSDGHPP
SRPTMGPSAQASAADRFHELLNREALGFDVRILPSPRGWTSPPSRTPSAATQRRKPIRDL
SHDEARAALEPLVEAAQDADFLSALSLQQRVRLVASIGRVIRAVRPPSPQKIFPGLRDEG
IAPEEEAFSELRHAAAEAMRMIMVTLPPMDSKEGGLVSASRQAALARVDIACLSDDVEAI
SASIEQMGKPGADELSQSISQLFRLRIDPLPTFDKPAFADKLHRQIEQAKTALVYLFEAW
LRAPQPVSSHASSITALRLLHTHNVAKILDLLLPPEQFPSAGTERKQKAWNDILRRRYGK
VLARSDPEPERWFEEEIANADPDELRLGLGFDPLKLGTHLVRHLARSGSALQALQIWKVI
DKPLDELQSERLTDRLTEEEKIRTMTPLVHGLTQQRLYEDANRFTTELESLAKSLASDAK
AAESFPDDPTYAGAPAMNALARNAFDVLAKLASDQGRAEIADRLLESLEGTGVDDKTTLK
LSARRLRAKASRFRLEEAKEVFEQSQQGDASSWQQYRLSGQMALAHLKVNDVEGALKVVS
EMLQAGLIVPLATINALMYGFARRGDVKSTYELFTQLSEGDFPHAHPTTSSWNALTKALQ
TERDTSSIEEIIRDMRRAGCRPDLETWTILLSAYVNNGQWTTAFALYRHLQLNADRTLQP
DTVVYNVMLRACILAATPATLVLELFRDLIARGVRPNKSTYTLVLQSLCNAGLMDEAEDL
FLILDRRQLSPHRPIGTEVIEPDQVLFTSMMAGYLRTGQREKADAMLTEMRVRGMKPGSH
TLALLVAAKVSSLREQRDHVDPRALNALVKETRYFLKQNNIPSSIPQPIALDKPAATLRA
LETIYWPILAEFSRRGEADEAQQLIDYLFQYGGGSRGASNLVVSRIRLYTILMGTLRNKE
LSSSGDMAEETITKLYEIFQVVYAAVRQRFVRMRRRMVPLPEAEEGAEPVEVVEERVDPA
QASILRNPLSIFLDTASRAGDHELIETTWRTLARQGFAFDSTNWNNLAMWFIQDLQLERA
FWIVEHVLCRPFAPDGVKAGFDLEDQTAAFAQELASVTRASAFGRMSARRWAVRRRPDDE
PPEAIDIDALLDDRTFDQPFRLSFTDGNDPRKADAQATRADVPEPQTTSSTEDSVDGEET
EPEEAPRLGFADALDAGFREHTEMLWHPFSRTLAALNSALETLTEEGSVRVSKAYAEHIR
KEEGIEVDDEERLRAALEARGELVDLDPEEARDAYRSLVTQHPHTVDAINRWRRRNDRLN
SIRRRASGSQRYDLRM